| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 3,139,985 – 3,140,081 |
| Length | 96 |
| Max. P | 0.989316 |
| Location | 3,139,985 – 3,140,081 |
|---|---|
| Length | 96 |
| Sequences | 4 |
| Columns | 96 |
| Reading direction | reverse |
| Mean pairwise identity | 93.89 |
| Mean single sequence MFE | -24.38 |
| Consensus MFE | -22.05 |
| Energy contribution | -22.05 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.90 |
| Structure conservation index | 0.90 |
| SVM decision value | 2.16 |
| SVM RNA-class probability | 0.989316 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 3139985 96 - 20766785 CACCCACCCCGUCCACUAUUCUCUGGCAUUCCACGUUGUCCAACGGACCUUAUGCAAAUGCAAUUGCAUAUGCCACUUGGCAGCUGCCAGUCACAU ......................((((((......((((.((((.((....(((((((......)))))))..))..))))))))))))))...... ( -24.10) >DroSec_CAF1 29907 96 - 1 CACCCACCCCGUCCAAUAUUCUCUGGCAUUCCACGUUGUCCAACGGACCUUAUGCAAAUGCAAUUGCAAAUGCCACUUGGCAGCUGCCAGUCACAU ......................((((((.........((((...)))).....((...(((....)))..((((....))))))))))))...... ( -22.10) >DroEre_CAF1 29636 93 - 1 ---CCACCCCGUCCAAUAUUCUCUGGCAUUCCGCAUUGUCCAACGGACCUUAUGCAAAUGCAAUUGCAAAUGCCACUUGGCAGCUGCCAGUCACAU ---...................((((((....((((.((((...))))...))))...(((....)))..((((....))))..))))))...... ( -24.90) >DroYak_CAF1 30218 93 - 1 ---CCACCCCGUCCAAUAUUCUCUGGCAUGCCGCAUUGUCCAACGGACCUCUUGCAAAUGCAAUUGCAAAUGCCACUUGGCAGCUGCCAGUCACAU ---...................((((((.((.(((..((((...))))...((((....)))).)))...((((....))))))))))))...... ( -26.40) >consensus ___CCACCCCGUCCAAUAUUCUCUGGCAUUCCACAUUGUCCAACGGACCUUAUGCAAAUGCAAUUGCAAAUGCCACUUGGCAGCUGCCAGUCACAU ......................((((((.........((((...)))).....((...(((....)))..((((....))))))))))))...... (-22.05 = -22.05 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:42:58 2006