Locus 62

Sequence ID 2R_DroMel_CAF1
Location 1,316,037 – 1,316,156
Length 119
Max. P 0.586117
window118

overview

Window 8

Location 1,316,037 – 1,316,156
Length 119
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 89.03
Mean single sequence MFE -35.06
Consensus MFE -23.86
Energy contribution -23.98
Covariance contribution 0.12
Combinations/Pair 1.22
Mean z-score -2.17
Structure conservation index 0.68
SVM decision value 0.11
SVM RNA-class probability 0.586117
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 1316037 119 + 20766785
GCUUGGCAUGUGGAAAAGAGCUCUUUUGUUUUUUCGGGGAGCACUUCCUGCUGUCUCUUUUCGCAU-UACUUAGUGUUUUUAUUGAAGCAAUUCUGUCAGGGCAGAAAACAACAGGCUGA
(((((((((((((((((((((......))))))..((((((((.....)))).)))).))))))))-...((((((....)))))).))..((((((....)))))).....)))))... ( -32.20)
>DroSec_CAF1 34434 119 + 1
GCUUGGCAUGUGGAAAAGAGCUGUUUUGUUUUUUCAGGCAGGACUUCCUGCUGUCUCUUUUCGCAU-UACUUAGUGUUUUUAUUGAGGCAAUUCUGUCAGGGCAGAAAACAACAGGCUGA
((((((((((((.((((((((((...........)))(((((....)))))...))))))))))))-..(((((((....)))))))))..((((((....)))))).....)))))... ( -40.20)
>DroSim_CAF1 13383 119 + 1
GCUUGGCAUGUGGAAAAGAGCUCUUUUGUUUUUUCAGGCAGCACUUCCUGCUGUCUCUUUUCGCAU-UACUUAGUGUUUUUAUUGAGGCAAUUCUGUCAGGGCAGAAAACAACAGGCUGA
(((((((((((((((((((((......))))))..((((((((.....))))))))..))))))))-..(((((((....)))))))))..((((((....)))))).....)))))... ( -39.50)
>DroEre_CAF1 16819 119 + 1
GCUUGGCAUGUGGAAAAGGGCUCUUUUGUUUUUUUUGGGAGCACUUCCUGCUGUCUGUUUUCGCAU-UACUUAGUGUUUUUAUUGAAGCAAUUCUGUCAGGGCAGAAGACAACAGUCUGA
....((((...((((....((((((..(.....)..))))))..))))))))(.(((((.((....-.......((((((....)))))).((((((....)))))))).))))).)... ( -30.20)
>DroYak_CAF1 3879 106 + 1
GCUUGGCAUGUGGAAAAGAGC--------------AGGGAGCACUUCUUUCUGUUUCUUUUCGCAUUUACUUAGUGCUUUUAUUGAAGCAAUUCUGUCAAGGCAGAAAACAACAGUUUGA
.(((((((((((((((..(((--------------((..((.....))..)))))..)))))))).........((((((....))))))....))))))).....((((....)))).. ( -33.20)
>consensus
GCUUGGCAUGUGGAAAAGAGCUCUUUUGUUUUUUCAGGGAGCACUUCCUGCUGUCUCUUUUCGCAU_UACUUAGUGUUUUUAUUGAAGCAAUUCUGUCAGGGCAGAAAACAACAGGCUGA
(((((..(((((.((((((((.............((((((....))))))..).))))))))))))........((((((....)))))).((((((....)))))).....)))))... (-23.86 = -23.98 +   0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:25:13 2006