Locus 619

Sequence ID 2R_DroMel_CAF1
Location 3,137,530 – 3,137,623
Length 93
Max. P 0.644439
window1110

overview

Window 0

Location 3,137,530 – 3,137,623
Length 93
Sequences 4
Columns 101
Reading direction forward
Mean pairwise identity 85.22
Mean single sequence MFE -21.40
Consensus MFE -14.15
Energy contribution -14.65
Covariance contribution 0.50
Combinations/Pair 1.16
Mean z-score -1.78
Structure conservation index 0.66
SVM decision value 0.23
SVM RNA-class probability 0.644439
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 3137530 93 + 20766785
UUCCACACAUCC-----AGCCGGGUUUCACUCGAAACUCCA-AAGAAAUGACUUUGGCGGCCCGCAGGCCACCACUUU--UUGUUUCCCUUGUCCGAAACC
............-----.((((((((((....))))).))(-(((......)))))))((((....))))........--..(((((........))))). ( -22.80)
>DroSec_CAF1 27545 89 + 1
UUCCACACAUCC-----AGCCGGAUUUCACUCGAAACUCUA-AAGAAAUGACUUCGGAGGCCCGCAGGCCACCACUUU--UUGUUUCCCUUGUCCGA----
............-----...(((((.......(((((...(-(((....(....)((.((((....)))).)).))))--..)))))....))))).---- ( -21.00)
>DroSim_CAF1 27978 93 + 1
UUCCACACAUCC-----AGCCGGAUUUCACUCGAAACUCUA-AAGAAAUGACUUCGGAGGCCCGCAGGCCACCACUUU--UUGUUUCCCUUGUCCGAAAUG
............-----...(((((.......(((((...(-(((....(....)((.((((....)))).)).))))--..)))))....)))))..... ( -21.00)
>DroYak_CAF1 27785 100 + 1
UUCCACACAUCUCAGUUACCCGGUUUUUACUCAAAACUCAAAAAGAAAUGACUUCGGAGGCCCGCAGGCCU-UACUUUUUGCGUUUCCCUUGUCCAAAACC
.....................((((((.((...((((.(((((((......(....)(((((....)))))-..))))))).)))).....))..)))))) ( -20.80)
>consensus
UUCCACACAUCC_____AGCCGGAUUUCACUCGAAACUCUA_AAGAAAUGACUUCGGAGGCCCGCAGGCCACCACUUU__UUGUUUCCCUUGUCCGAAACC
....................(((((.......(((((.......(((.....)))((.((((....)))).)).........)))))....)))))..... (-14.15 = -14.65 +   0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:42:57 2006