Locus 6187

Sequence ID 2R_DroMel_CAF1
Location 19,472,804 – 19,472,924
Length 120
Max. P 0.616839
window9908

overview

Window 8

Location 19,472,804 – 19,472,924
Length 120
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 96.11
Mean single sequence MFE -53.73
Consensus MFE -49.25
Energy contribution -50.03
Covariance contribution 0.78
Combinations/Pair 1.02
Mean z-score -1.77
Structure conservation index 0.92
SVM decision value 0.17
SVM RNA-class probability 0.616839
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 19472804 120 - 20766785
UUGGAGCACCACACCGUAAUGGGCUUUUCCGUCCGCUCCGAGUACUCCAGGGCGUGGGGGAAAAGCCCGUCGCCUGCCAGGCGGUUCACCUUCUUGAAGACCCUGUAGGAAUGGUCCCGC
..((.(.((((..(((..((((((((((((.(((((((.((....))..))))).)).))))))))))))..)....((((.(.((((......))))..)))))..))..))))))).. ( -49.00)
>DroSim_CAF1 2615 120 - 1
UUGGAGCACCACACCGUGAUGGGCUUCUCCGUCCGCUCCGAGUACUCCAGGGCGUGGGGGAAGAGCCCGUCGCCCGCCAGGCGGUUCACCUUCUUGAAGACCCUGUAGGAGUGGUCCCGC
..((.(.(((((...((((((((((..(((.(((((((.((....))..))))).)).)))..))))))))))((..((((.(.((((......))))..)))))..)).)))))))).. ( -55.70)
>DroYak_CAF1 1931 120 - 1
UUGGAGCACCACACCGUGAUGGGCUUCUCCCUCCGCUCCGAGUACUCCAGGGCGUGGGGGAAGAGCCCGUCUCCCGCCAGGCGGUUCACCUUCUUGAAGACCCUGUAGGAGUGGUCCCGC
..((.(.(((((...(.((((((((..(((((((((((.((....))..))))).))))))..)))))))).)((..((((.(.((((......))))..)))))..)).)))))))).. ( -56.50)
>consensus
UUGGAGCACCACACCGUGAUGGGCUUCUCCGUCCGCUCCGAGUACUCCAGGGCGUGGGGGAAGAGCCCGUCGCCCGCCAGGCGGUUCACCUUCUUGAAGACCCUGUAGGAGUGGUCCCGC
..((.(.(((((.(((((((((((((.(((.(((((((.((....))..))))).)).))).)))))))))))....((((.(.((((......))))..)))))..)).)))))))).. (-49.25 = -50.03 +   0.78)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:04:59 2006