Locus 6182

Sequence ID 2R_DroMel_CAF1
Location 19,465,429 – 19,465,534
Length 105
Max. P 0.725631
window9898

overview

Window 8

Location 19,465,429 – 19,465,534
Length 105
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 81.45
Mean single sequence MFE -27.15
Consensus MFE -16.12
Energy contribution -17.15
Covariance contribution 1.03
Combinations/Pair 1.17
Mean z-score -2.23
Structure conservation index 0.59
SVM decision value 0.41
SVM RNA-class probability 0.725631
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 19465429 105 + 20766785
GCUCGAAUCACACACAAAU---------CUGGGGGCA------UACACAUAUAUCUGUCUGCAGGUAAACACGUUGUUUACAGCCACCCAGCUAUAUAACACUAAUUUGAGCUGAGGAGC
((((((((...........---------((((((((.------...........(((....)))((((((.....)))))).))).))))).............))))))))........ ( -30.55)
>DroSec_CAF1 74 105 + 1
GCUCGAAUCACACACAAAU---------CUGGGGGCA------UAUACAUAUAUCUGUCUGCAUGUAAACACGUUGUUUACAGCCACCCAGCUAUAUAACACUAAUUUGAGUUGGGGAGC
((((...............---------((((((((.------...(((......))).....(((((((.....)))))))))).)))))..........(((((....))))).)))) ( -27.40)
>DroSim_CAF1 70 105 + 1
GCUCGAAUCACACACAAAU---------CUGGGGGCA------UACACAUAUAUCUGUCUGCAGGUAAACACGUUGUUUACAGCCACCCAGCUAUAUAACACUAAUUUGAGCUGGGGAGC
((((((((...........---------((((((((.------...........(((....)))((((((.....)))))).))).))))).............))))))))........ ( -30.55)
>DroPer_CAF1 1759 111 + 1
GUUCAAACCGCAUAUACAUAGGAUAGGCCUGAAAGUGUAUAAGUAUAUAUACAUUCGUCUAUA-GUAAACACGUUGUUUACAGAAAGCUAGCUAUAUCACUCUUAAUUAA--------AC
.........(.(((((..(((.((((((..(((.(((((((....))))))).))))))))).-((((((.....))))))......)))..))))))............--------.. ( -20.60)
>DroEre_CAF1 74 105 + 1
GCUCGAAUCACACACAAAU---------CUGGGGGCA------UACACAUAUAUCUGUCUGCAGGUAAACACGUUGUUUACAGCCACCUAGCUAUAUAACACUAAUUUAAGCUAGGGAGC
((((...............---------(((.(((((------............))))).)))((((((.....)))))).....(((((((................))))))))))) ( -27.99)
>DroYak_CAF1 70 105 + 1
GCUCGAAUCACACACAAAU---------CUGGGGGCA------UACACAUAUAUCUGUCUGCAGGUAAACACGUUGUUUACAGCCCCCUAUCUAUAUAACACUAAUUUAAGCUAAGGAGC
((((...............---------..((((((.------...........(((....)))((((((.....)))))).)))))).............((......)).....)))) ( -25.80)
>consensus
GCUCGAAUCACACACAAAU_________CUGGGGGCA______UACACAUAUAUCUGUCUGCAGGUAAACACGUUGUUUACAGCCACCCAGCUAUAUAACACUAAUUUAAGCUGGGGAGC
((((........................((((((((..................(((....)))((((((.....)))))).))).)))))..........((......)).....)))) (-16.12 = -17.15 +   1.03)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:04:50 2006