| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 19,392,101 – 19,392,211 |
| Length | 110 |
| Max. P | 0.728551 |
| Location | 19,392,101 – 19,392,211 |
|---|---|
| Length | 110 |
| Sequences | 6 |
| Columns | 113 |
| Reading direction | forward |
| Mean pairwise identity | 82.12 |
| Mean single sequence MFE | -40.08 |
| Consensus MFE | -26.42 |
| Energy contribution | -26.65 |
| Covariance contribution | 0.23 |
| Combinations/Pair | 1.23 |
| Mean z-score | -2.10 |
| Structure conservation index | 0.66 |
| SVM decision value | 0.42 |
| SVM RNA-class probability | 0.728551 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 19392101 110 + 20766785 CUGCACUUGUCUCGGGAGAGCGGGACGGAAAAU--UUCAUUCGUUUCCGCGUUUGGAGGCG-GUCCUAACGAGCUCCACUCGACAUAGGGGUGGAAAUCUGACUUUCCGGCGC ..((.((((.(((....))))))).((((((..--.(((.(((((((((....))))))))-).......((..(((((((.......)))))))..))))).)))))))).. ( -39.00) >DroPse_CAF1 10129 108 + 1 CUGCACUUGUCUCUGGUGAAAGAGAUAGAAAAUAUUUCA-----CUCCGCGUUUGGGGGCGUGUGCUAACGAGCUCCAAACGAACUAGGGGUGGAAAUUUUACGCUACAAUUU ..((..((((((((......))))))))(((((.(((((-----((((.(((((((((.(((......)))..))))))))).....))))))))))))))..))........ ( -40.20) >DroEre_CAF1 5941 110 + 1 CUGCACUUGUCUCGGGAGAACGGGACGGAAAAU--UUCAUUCGUUUCCGCGUUUGGAGGCG-GUGCUAACGAGCUCCACUCGACAUAGGGGUGGAAAUGCCACUUUCCGGCGC ........((((((......))))))(((((..--........)))))((((..(((((.(-(((((....)))(((((((.......)))))))...))).)))))..)))) ( -39.80) >DroYak_CAF1 5944 110 + 1 CUGCACUUGUCUCGGGAGAACGGGACGGAAAAU--UUCAUUCGUUUCCGCGUUUGGAGGCG-GUGCUAACGAGCUCCACUCGACAUAAGGGUGGAAAUGCUAUUUUCCGGCGC ..((....((((((......))))))(((((((--..((((((((((((....))))))))-..(((....)))(((((((.......)))))))))))..))))))).)).. ( -42.00) >DroAna_CAF1 4876 110 + 1 CUGCACUUGUCUCCGGAGAAAGGGACGGAAAAU--UUCAUUCGUUUCCGCGUUUGGAGGCG-GUGCUAACGAGCUCCACUCGACAUAAGGGUGGAAAUUGGAUGAAGCGGCGC ..(((((.((((((((((...(..(((((....--....)))))..)..).))))))))))-))))...(((..(((((((.......)))))))..)))............. ( -39.30) >DroPer_CAF1 8869 108 + 1 CUGCACUUGUCUCUGGUGAAAGAGAUAGAAAAUAUUUCA-----CUCCGCGUUUGGGGGCGUGUGCUAACGAGCUCCAAACGAACUAGGGGUGGAAAUUUUACGCUACAAUUU ..((..((((((((......))))))))(((((.(((((-----((((.(((((((((.(((......)))..))))))))).....))))))))))))))..))........ ( -40.20) >consensus CUGCACUUGUCUCGGGAGAAAGGGACGGAAAAU__UUCAUUCGUUUCCGCGUUUGGAGGCG_GUGCUAACGAGCUCCACUCGACAUAGGGGUGGAAAUUUUACGUUCCGGCGC ..((((((((((((......))))))))..............(((((((....)))))))..))))........(((((((.......))))))).................. (-26.42 = -26.65 + 0.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:04:30 2006