| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 19,355,995 – 19,356,108 |
| Length | 113 |
| Max. P | 0.637450 |
| Location | 19,355,995 – 19,356,108 |
|---|---|
| Length | 113 |
| Sequences | 3 |
| Columns | 119 |
| Reading direction | forward |
| Mean pairwise identity | 89.80 |
| Mean single sequence MFE | -43.73 |
| Consensus MFE | -36.00 |
| Energy contribution | -36.00 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.04 |
| Structure conservation index | 0.82 |
| SVM decision value | 0.21 |
| SVM RNA-class probability | 0.637450 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 19355995 113 + 20766785 GGCGAUG------GCCAAUGGCAAUUGGAAUUGCAAGGACAACGCCAACGGCUGCUGCUAGGCACUGCUAUGCCACGAAAUCGAGCGGCCGGUUGAAGCCACCCUUGCGAUUCAUGUAC ..((((.------(((...))).))))(((((((((((...........(((((((....((((......)))).((....)))))))))(((....)))..)))))))))))...... ( -45.00) >DroSec_CAF1 3172 106 + 1 GGCGUUGGC-------------AAUGGCAAUUGCAAGGACAACGCCAACGGCUGCUGCUAGGCACUGCUAUGCCACGAAAUCGAGCGGCCGGUUGAAGCCACCCUUGCGAUUCAUGUAC (((((((((-------------(((....))))).....)))))))..((((((((....((((......)))).((....))))))))))(((((((.....))).))))........ ( -37.90) >DroSim_CAF1 3193 119 + 1 GGCGUUGGCAAUGGCCAAUGGCAAUGGCAAUUGCAAGGACAACGCCAACGGCUGCUGCUAGGCACUGCUAUGCCACGAAAUCGAGCGGCCGGUUGAAGCCACCCUUGCGAUUCAUGUAC (.(((((((....))))))).).((((..(((((((((...........(((((((....((((......)))).((....)))))))))(((....)))..))))))))))))).... ( -48.30) >consensus GGCGUUGGC____GCCAAUGGCAAUGGCAAUUGCAAGGACAACGCCAACGGCUGCUGCUAGGCACUGCUAUGCCACGAAAUCGAGCGGCCGGUUGAAGCCACCCUUGCGAUUCAUGUAC ..........................(.((((((((((...........(((((((....((((......)))).((....)))))))))(((....)))..)))))))))))...... (-36.00 = -36.00 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:04:11 2006