Locus 615

Sequence ID 2R_DroMel_CAF1
Location 3,116,756 – 3,116,847
Length 91
Max. P 0.695577
window1106

overview

Window 6

Location 3,116,756 – 3,116,847
Length 91
Sequences 5
Columns 92
Reading direction forward
Mean pairwise identity 83.00
Mean single sequence MFE -32.24
Consensus MFE -23.84
Energy contribution -25.64
Covariance contribution 1.80
Combinations/Pair 1.19
Mean z-score -1.73
Structure conservation index 0.74
SVM decision value 0.34
SVM RNA-class probability 0.695577
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 3116756 91 + 20766785
UUUUGGCAGGCUCGCCGAGUGCAUUUGUGUGUGGUGGUUGUGUGGUGCCUGGAUUGCAUACUGCACCCGAAUGCCAG-CUCUUCGCACACCC
...((((.((....))(((((((((((.(((..((....(((..((......))..)))))..))).)))))))..)-)))...)).))... ( -29.90)
>DroSec_CAF1 12174 92 + 1
UUUUGGCAGGCUCGCCGAGUGCAUUUGUGUGUGGUGGUUGUGUGUUGCCUGGAUUGCACACUGCACACCAAUGCAUUGCUCUUCGCACACCC
..(((((......)))))(((((((.(((((..(((((.((.(.......).)).)).)))..))))).)))))))(((.....)))..... ( -31.50)
>DroSim_CAF1 12208 91 + 1
UUUUGGCAGGCUCGCCGAGUGCAUUUGUGUGUGGUGGUUGUGUGUUGCCUGGAUUGCACACAGCACACCAAUGCAAUGC-CUUCGCACACCC
...((((.((....))(((.(((((.((((.((((((((((((((..........))))))))).))))))))))))))-.))))).))... ( -34.80)
>DroEre_CAF1 11756 78 + 1
---UGGCAGGCUGGCCAAGUGCAUUUGUGUGUGGUGGUUGUGUGGUGCCUGGAUUGCA--CUGCAUACAAAUGCCAC-CC----ACAC----
---((((......)))).........(((((.((((((((((..((((.......)))--)..)))).....)))))-))----))))---- ( -33.10)
>DroYak_CAF1 11673 86 + 1
---UGGCAGGCUUGCCAAGUGCAUUUGUGUGCGGUGGUUGUGUGGUGCCUCGAUUGCA--AUGCAUACAAAUGCCAG-CUCUGCGCACACCC
---..(((((((......(.((((((((((((.(..((((...(....).))))..).--..)))))))))))))))-).))))........ ( -31.90)
>consensus
UUUUGGCAGGCUCGCCGAGUGCAUUUGUGUGUGGUGGUUGUGUGGUGCCUGGAUUGCA_ACUGCACACAAAUGCCAG_CUCUUCGCACACCC
..(((((......)))))..(((((((((((((((....(((((((......)))))))))))))))))))))).................. (-23.84 = -25.64 +   1.80)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:42:53 2006