| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 19,333,095 – 19,333,186 |
| Length | 91 |
| Max. P | 0.837772 |
| Location | 19,333,095 – 19,333,186 |
|---|---|
| Length | 91 |
| Sequences | 3 |
| Columns | 92 |
| Reading direction | forward |
| Mean pairwise identity | 75.37 |
| Mean single sequence MFE | -20.67 |
| Consensus MFE | -12.14 |
| Energy contribution | -12.37 |
| Covariance contribution | 0.23 |
| Combinations/Pair | 1.13 |
| Mean z-score | -1.90 |
| Structure conservation index | 0.59 |
| SVM decision value | 0.74 |
| SVM RNA-class probability | 0.837772 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 19333095 91 + 20766785 CACUCGAAAGCAGGAAAAUGCGCGCCAAGGUGCAAAUGUGGUGCAA-GUGGUGCACGGGGUGCAAGGGGAACGAAGGGGGAAAUUCUGCGAA ..((((...(((......)))((((((...((((.......)))).-.)))))).)))).((((..(....(....)......)..)))).. ( -27.20) >DroEre_CAF1 11206 88 + 1 CACUCGAAAGCAUGAAAAUGUGCGCCAAGGUGCAAAUGUGGUGCAAAGUG---AAAGCGG-GAAAGCGAAGGAAAGGGGGAAAUGCUGCGAA ...(((..(((((.......(((((((..((....)).))))))).....---...((..-....))...............))))).))). ( -19.60) >DroYak_CAF1 11421 73 + 1 CACUCGAAAGCAUGGAAAUGUGCACAAAGGUGCAAAUGUGGUGCAAAGUG---AAAAUG----------------GGGGGAAAUUCUGCGAA ((((.....((((.(.....(((((....)))))....).))))..))))---......----------------.(.((.....)).)... ( -15.20) >consensus CACUCGAAAGCAUGAAAAUGUGCGCCAAGGUGCAAAUGUGGUGCAAAGUG___AAAGCGG_G_AAG_G_A___AAGGGGGAAAUUCUGCGAA ...((....((((.(.....(((((....)))))....).))))................................(.((.....)).))). (-12.14 = -12.37 + 0.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:03:48 2006