Locus 6137

Sequence ID 2R_DroMel_CAF1
Location 19,326,026 – 19,326,128
Length 102
Max. P 0.973704
window9824

overview

Window 4

Location 19,326,026 – 19,326,128
Length 102
Sequences 3
Columns 102
Reading direction reverse
Mean pairwise identity 95.42
Mean single sequence MFE -35.07
Consensus MFE -33.37
Energy contribution -33.70
Covariance contribution 0.33
Combinations/Pair 1.00
Mean z-score -2.66
Structure conservation index 0.95
SVM decision value 1.72
SVM RNA-class probability 0.973704
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 19326026 102 - 20766785
AUUCUAAAUACUUUUUGAACGGAUCGGUGCUGCAAAGCGCCGUUCCAAAGGCCAGUGCUGCAAGUCGGCUGAGUCGUAGCGCGGUGAAAUUCAAAUAAAUGC
.............((((((.(((.(((((((....))))))).)))....(((.(((((((.(.((....)).).))))))))))....))))))....... ( -35.90)
>DroSec_CAF1 3970 102 - 1
AUUUUAAACACUUCUUGAACGGAUCGGUGCUGCAAAGCGCCGUUCCACAGGCCAGUGCUGCAAGUCGGCUGAGUCGUAGCGCGGUUAAUUUCAAAUAAAUGC
..............(((((.(((.(((((((....))))))).)))...((((.(((((((.(.((....)).).)))))))))))...)))))........ ( -35.40)
>DroSim_CAF1 4042 102 - 1
AUUUUAAAUACUUUUUGAACGGAUCGGUGCUGCAAAGCGCCUUUCCACAGGCCAGUGCUGCAAGUCGGCUGAGUCGUAGCGCGGUUAAAUUCAAAUAAAUGC
.............((((((.(((..((((((....))))))..)))...((((.(((((((.(.((....)).).)))))))))))...))))))....... ( -33.90)
>consensus
AUUUUAAAUACUUUUUGAACGGAUCGGUGCUGCAAAGCGCCGUUCCACAGGCCAGUGCUGCAAGUCGGCUGAGUCGUAGCGCGGUUAAAUUCAAAUAAAUGC
..............(((((.(((.(((((((....))))))).)))....(((.(((((((.(.((....)).).))))))))))....)))))........ (-33.37 = -33.70 +   0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:03:38 2006