Locus 6130

Sequence ID 2R_DroMel_CAF1
Location 19,283,122 – 19,283,213
Length 91
Max. P 0.868336
window9814

overview

Window 4

Location 19,283,122 – 19,283,213
Length 91
Sequences 5
Columns 91
Reading direction reverse
Mean pairwise identity 97.36
Mean single sequence MFE -20.08
Consensus MFE -18.06
Energy contribution -18.26
Covariance contribution 0.20
Combinations/Pair 1.00
Mean z-score -1.51
Structure conservation index 0.90
SVM decision value 0.86
SVM RNA-class probability 0.868336
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 19283122 91 - 20766785
CUCUGAAAAGUUUGGCCCUGAAACUGAAAACAAAUCCACGAAAUGCAUUUCAGCCACCUUUCAUAACGAGAGAGUGGCUUAUGUAAGAGCA
((((....(((((.......)))))..................(((((...(((((((((((.....))))).)))))).))))))))).. ( -23.10)
>DroSec_CAF1 33080 91 - 1
CUCUGAAAAGUUUGGCCCUGAAACUGAAAACAAAUCCACGAAAUGCAUUUCAGCCACCUUUCAUAACGAGAGAGUGGCUUACGUAAGAGCA
((((....(((((.......)))))............((((((....))))(((((((((((.....))))).))))))...)).)))).. ( -20.10)
>DroSim_CAF1 23470 91 - 1
CUCUGAAAAGUUUGGCCCUGAAACUGAAAACAAAUCCACGAAAUGCAUUUCAGCCACCUUUCAUAACGAGAGAGUGGCUUACGUAAGAGCA
((((....(((((.......)))))............((((((....))))(((((((((((.....))))).))))))...)).)))).. ( -20.10)
>DroEre_CAF1 25964 91 - 1
CUCUGAAAAGUUUGGCCAUGAAACUGAAAACAAAUCCACGAAAUGCAUUUCAACCACCUUUCAUUACGAGAGAGUGGCUUACGUAAGAGCA
((((.....((..((((((....................((((....))))......(((((.....))))).)))))).))...)))).. ( -17.50)
>DroYak_CAF1 23087 91 - 1
CUCUGAAAAGUUUGGCCCUGAAACUGAAAACAAAUCCACAAAAUGCAUUUCAGCCACCUUUCAUAAUGAGAGAGUGGCUUACGUAAGAGCA
((((....(((((.......)))))..................(((.....(((((((((((.....))))).))))))...))))))).. ( -19.60)
>consensus
CUCUGAAAAGUUUGGCCCUGAAACUGAAAACAAAUCCACGAAAUGCAUUUCAGCCACCUUUCAUAACGAGAGAGUGGCUUACGUAAGAGCA
((((....(((((.......)))))..................(((.....(((((((((((.....))))).))))))...))))))).. (-18.06 = -18.26 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:03:29 2006