| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 3,111,924 – 3,112,028 |
| Length | 104 |
| Max. P | 0.654957 |
| Location | 3,111,924 – 3,112,028 |
|---|---|
| Length | 104 |
| Sequences | 3 |
| Columns | 108 |
| Reading direction | forward |
| Mean pairwise identity | 86.56 |
| Mean single sequence MFE | -28.57 |
| Consensus MFE | -27.82 |
| Energy contribution | -27.60 |
| Covariance contribution | -0.22 |
| Combinations/Pair | 1.04 |
| Mean z-score | -0.73 |
| Structure conservation index | 0.97 |
| SVM decision value | 0.25 |
| SVM RNA-class probability | 0.654957 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 3111924 104 + 20766785 --ACCAGCUCCAUCU--CCAUUGCCAAUUCCCCGUCCGUUGUCCGUACCCUUUGUUCCGGCCAUUUGGGCAUUUACGAGGGAACGCAAAAGGACAUUCGAGUGGGACC --.((.((((.((.(--((.((((...((((((((....((((((...((........)).....))))))...))).))))).))))..))).))..)))).))... ( -30.20) >DroSec_CAF1 7364 108 + 1 CCUACAUCUCCAUCUCCCCAUUGCCAAUUCCCCGUCCGUUGUCCGUACCCUUUGUUCCGGCCAUUUGGGCAUUUACGAGGGAACGCAAAAGGACAUUCGAGUGGGACC (((((.((...((.(((...((((...((((((((....((((((...((........)).....))))))...))).))))).))))..))).))..)))))))... ( -29.70) >DroSim_CAF1 6611 90 + 1 ------------------CAUUGGCAAUUCCCCGUCCGUUGUCCGUACCCUUUGUUCCGGUCAUUUGGGCAUUUACGAGGGAACGCAAAAGGACAUUCGAGUGGGACC ------------------............((((..((.(((((((..(((((((....(((.....)))....)))))))...))....)))))..))..))))... ( -25.80) >consensus ____CA_CUCCAUCU__CCAUUGCCAAUUCCCCGUCCGUUGUCCGUACCCUUUGUUCCGGCCAUUUGGGCAUUUACGAGGGAACGCAAAAGGACAUUCGAGUGGGACC ..............................((((..((.(((((((..(((((((....(((.....)))....)))))))...))....)))))..))..))))... (-27.82 = -27.60 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:42:51 2006