Locus 6127

Sequence ID 2R_DroMel_CAF1
Location 19,272,734 – 19,272,826
Length 92
Max. P 0.523235
window9811

overview

Window 1

Location 19,272,734 – 19,272,826
Length 92
Sequences 6
Columns 93
Reading direction forward
Mean pairwise identity 81.51
Mean single sequence MFE -19.07
Consensus MFE -16.16
Energy contribution -14.88
Covariance contribution -1.27
Combinations/Pair 1.29
Mean z-score -1.18
Structure conservation index 0.85
SVM decision value -0.02
SVM RNA-class probability 0.523235
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 19272734 92 + 20766785
CCCAAUCGAAGUCGUCUGAGUUACGCAGUUUAUGGCUUAUUAAUGUGACGGCGUUUUGUUGUCAUUUUGUUGCGGCUUAUUUAUUUGU-UUUU
........(((((((.(((((((.........))))))).(((.((((((((.....)))))))).)))..)))))))..........-.... ( -18.50)
>DroPse_CAF1 15363 78 + 1
--------CAG----UUGAGUUACGCAGCCCACGGCUUAUUAAUGUGGCAACGUUUUGUUGUCAUUUUGUUGCGGCUC---UAUUUUCGUUUU
--------...----..((((..(((((((...)))....(((.((((((((.....)))))))).))).))))))))---............ ( -19.80)
>DroSec_CAF1 22838 92 + 1
CCCAAUCGAAGUCGUCUGAGUUACGCAGUUUAUGGCUUAUUAAUGUGACGGCGUUUUGUUGUCAUUUUGUAGCGGCUUAUUUAUUUGU-UUUU
........(((((((.(((((((.........))))))).(((.((((((((.....)))))))).)))..)))))))..........-.... ( -18.60)
>DroSim_CAF1 13169 92 + 1
CCCAAUCGAAGUCGUCUGAGUUACGCAGUUUAUGGCUUAUUAAUGUGACGGCGUUUUGUUGUCAUUUUGUUGCGGCUUAUUUAUUUGU-UUUU
........(((((((.(((((((.........))))))).(((.((((((((.....)))))))).)))..)))))))..........-.... ( -18.50)
>DroEre_CAF1 15741 92 + 1
CUCAAUCGAAAUCGUCAGAGUUACGCAGUUUAUGGCUUAUUAAUGUGGCGGCGUUUUGUUGUCAUUUUGCUGUGGCUUAUUUAUUUGC-UUUU
(((...((....))...)))...((((((..(((((.....(((((....))))).....)))))...))))))((..........))-.... ( -19.20)
>DroPer_CAF1 15887 78 + 1
--------CAG----UUGAGUUACGCAGCCCACGGCUUAUUAAUGUGGCAACGUUUUGUUGUCAUUUUGUUGCGGCUC---UAUUUUCGUUUU
--------...----..((((..(((((((...)))....(((.((((((((.....)))))))).))).))))))))---............ ( -19.80)
>consensus
CCCAAUCGAAGUCGUCUGAGUUACGCAGUUUAUGGCUUAUUAAUGUGACGGCGUUUUGUUGUCAUUUUGUUGCGGCUUAUUUAUUUGC_UUUU
.................((((..((((((.....)))...(((.((((((((.....)))))))).)))..)))))))............... (-16.16 = -14.88 +  -1.27)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:03:26 2006