| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 19,239,833 – 19,239,948 |
| Length | 115 |
| Max. P | 0.666754 |
| Location | 19,239,833 – 19,239,948 |
|---|---|
| Length | 115 |
| Sequences | 3 |
| Columns | 115 |
| Reading direction | reverse |
| Mean pairwise identity | 91.55 |
| Mean single sequence MFE | -33.50 |
| Consensus MFE | -24.19 |
| Energy contribution | -24.42 |
| Covariance contribution | 0.23 |
| Combinations/Pair | 1.07 |
| Mean z-score | -2.94 |
| Structure conservation index | 0.72 |
| SVM decision value | 0.28 |
| SVM RNA-class probability | 0.666754 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 19239833 115 - 20766785 AAAAUACUUGGAACGGCCAAGAACUCAAUGGCACAAGUGCUCUUCAAGGCAUUCGACUAUAAAGUUGCCUGUUUCACAAUGUUGCAGACAUCUUUGAAAGUGAAUGACCAUCAUA ....((((((.....((((.........)))).))))))........((((((((....(((((.((.((((..(.....)..)))).)).)))))....)))))).))...... ( -27.80) >DroSec_CAF1 30583 113 - 1 AAAGUACUUGGAUCGGCCAAGAACUCAAUGGCACAAGUGCUCUUCAAGGCAUUCGGCUACAAAGUUGUCUGUUGCACACU--UUCAGACAUCUUUGAUAGUGAAUGCCCAGCAUA ..((((((((.....((((.........)))).))))))))......((((((((.((((((((.((((((.........--..)))))).))))).)))))))))))....... ( -40.60) >DroSim_CAF1 29302 113 - 1 AAAAUACUUGGAUCGGCCAAGAACUCAAUGGCACAAGUGCUCUUCAAGGCAUUCGGCUACAAAGUUGACUGUUGCACACU--UUCAGACCUCUUUGAAAGUGAAUGCCCAGCAUA ......(((((.....)))))((((...((((.(.((((((......)))))).)))))...))))(.(((..(((((((--((((((....))))))))))..))).))))... ( -32.10) >consensus AAAAUACUUGGAUCGGCCAAGAACUCAAUGGCACAAGUGCUCUUCAAGGCAUUCGGCUACAAAGUUGACUGUUGCACACU__UUCAGACAUCUUUGAAAGUGAAUGCCCAGCAUA ....((((((.....((((.........)))).))))))........(((((((.(((.(((((.((.(((.............))).)).)))))..))))))))))....... (-24.19 = -24.42 + 0.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:03:09 2006