| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 3,103,781 – 3,103,885 |
| Length | 104 |
| Max. P | 0.616558 |
| Location | 3,103,781 – 3,103,885 |
|---|---|
| Length | 104 |
| Sequences | 6 |
| Columns | 104 |
| Reading direction | forward |
| Mean pairwise identity | 81.60 |
| Mean single sequence MFE | -37.43 |
| Consensus MFE | -24.24 |
| Energy contribution | -25.99 |
| Covariance contribution | 1.75 |
| Combinations/Pair | 1.19 |
| Mean z-score | -1.71 |
| Structure conservation index | 0.65 |
| SVM decision value | 0.17 |
| SVM RNA-class probability | 0.616558 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 3103781 104 + 20766785 UGCCGCAGCUACUACCGUGGUUGCAGCAACCAAGCCGAAACAGGAAAACAAGCUGCGUGACAAGGUGGCCGCUUUGGUGGCAAAUGCGCAAUCAAGUGCAGAGA (((((((((..(((((.((..((((((.......((......)).......))))))...)).)))))..)))...))))))..(((((......))))).... ( -38.84) >DroGri_CAF1 20619 98 + 1 AGCCGCUCA-ACCACCGUCCAAGCCGC-----AACCGAAGCCAGAGAGCAAGCUGCGCGACAAGGUGGCCGCCUUGGUGGCCUCGGCUCAGACCAGUGCCGAGA .....(((.-..(((.(((..(((((.-----.(((...(((((........))).)).....)))((((((....)))))).)))))..)))..)))..))). ( -35.90) >DroSec_CAF1 18414 104 + 1 UGCCGCUGCUACCACCGUGGUUGCAGCAACCAAGCCGAAACCGGAAAGCAAGCUGCGUGACAAGGUGGCCGCUUUGGUGGCAAAUGCUCAAUCAAGUGCAGAGA (((((((((..(((((.((..((((((.......(((....))).......))))))...)).)))))..))...)))))))..(((.(......).))).... ( -39.04) >DroEre_CAF1 18596 104 + 1 UGCCGCUGCUACUAACGUGGUUGCAGCAACCAAGCCAAAACCAGAAAGCAAGCUGCGUGACAAGGUGGCCGCUUUGGUAGCAAAUGCGCAAUCAAGUGCAGAGA ......(((((((((.(((((..(.((......))....(((((........))).))......)..))))).)))))))))..(((((......))))).... ( -33.80) >DroYak_CAF1 18634 104 + 1 UGCCGCUGCUACUAACGUGGUUGCAGCGACCAAGCCAAAGCCAGAAAGCAAGUUGCGGGACAAGGUGGCCGCUUUGGUGGCAAAUGCGCAAUCAAGUGCAGAGA (((((((((.(((.....))).)))))......((((((((......((.....)).((.(.....).))))))))))))))..(((((......))))).... ( -37.90) >DroAna_CAF1 18100 104 + 1 UGCCGCUUCUACUACCGUAGCCGCUGUGGCCAAGCCCAAGCCGGAGAACAAGCUGCGAGACAAGGUAGCUGCUCUGGUGGCUAGUGCGCAAUCGAGUGCUGAGA .(((((..((((....)))).....)))))..((((...(((((((....((((((........)))))).)))))))))))...((((......))))..... ( -39.10) >consensus UGCCGCUGCUACUACCGUGGUUGCAGCAACCAAGCCGAAACCAGAAAGCAAGCUGCGUGACAAGGUGGCCGCUUUGGUGGCAAAUGCGCAAUCAAGUGCAGAGA .(((((.(((((....))))).(((((.......(........).......)))))....((((((....)))))))))))...(((((......))))).... (-24.24 = -25.99 + 1.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:42:48 2006