Locus 6100

Sequence ID 2R_DroMel_CAF1
Location 19,200,824 – 19,200,942
Length 118
Max. P 0.573149
window9771

overview

Window 1

Location 19,200,824 – 19,200,942
Length 118
Sequences 5
Columns 118
Reading direction forward
Mean pairwise identity 81.69
Mean single sequence MFE -38.88
Consensus MFE -22.88
Energy contribution -23.04
Covariance contribution 0.16
Combinations/Pair 1.26
Mean z-score -1.87
Structure conservation index 0.59
SVM decision value 0.08
SVM RNA-class probability 0.573149
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 19200824 118 + 20766785
GCUUAGCUGCGCUGGAUUCGACUGGGUGCAGCUUUUAGGUUGUACCGCCUGAUCAAGAACAAUAUGUGUUGUUAUAGGCGGCGAAAAGGAAUGAGUACUUUUCUGUGGCUGAAUAGCU
(((((((..((((...........(((((((((....)))))))))(((((......((((((....)))))).))))))))((((((.........)))))).)..))))...))). ( -40.80)
>DroSec_CAF1 8401 118 + 1
GCUUAGCUGCGGUGGAUUCGACUGGGUGCAGCUUUUAGGUUGUACCUCCUGAUCAAGAGCAAUAGGUGUUGUUAUAGGCGGCGAAGCGGAAUGAGUACUCUUCUGUGGCUGAAUGGCU
(((((((..(((.(((((((.((((((((((((....))))))))).((((..(((.(.(....).).)))...)))))))))))((.......))..))).)))..))))...))). ( -38.90)
>DroSim_CAF1 8410 118 + 1
GCUUAGCUGCGGUGGAUUCGACUGGGUGCAGCUUUUAGGUUGUACCGCCUGAUCAAGAACAAUAGGUGUUGUUAUAGGCGGCGAAGCGGAAUGAGUACUCUUCUGUGGCUGAAUGGCU
(((((((..(((.(((((((.((.(((((((((....)))))))))(((((......((((((....)))))).)))))))))))((.......))..))).)))..))))...))). ( -41.30)
>DroEre_CAF1 8474 103 + 1
U---------------UUAGACUGGACGCAGCUUUUGGGUUGUACAGCCUGCUCAGGAACAACAGGUGUUGUUAGCGGCGGCGGGAAAGAUUGAGUAUUUUUCUGUUGCUGAAUGGCU
.---------------..((.(((...((((((....)))))).))).))((.((..((((((....))))))..((((((((((((((........))))))))))))))..)))). ( -31.60)
>DroYak_CAF1 8537 115 + 1
GCUUGGCUGCGGUGGAUUAGACUGGAUGCAGCUUUUGGGUUGUACAGCCUGAUUUAGAACAUUAGGUGU---AAUCGGCGGCGGGGAGUAUUGAGUACUCUUCUGUGGCUGAAUGGCU
(((.((((((.((.(((((.(((.((((...((.(..((((....))))..)...))..)))).))).)---)))).)).))(((((((((...)))))))))...))))....))). ( -41.80)
>consensus
GCUUAGCUGCGGUGGAUUCGACUGGGUGCAGCUUUUAGGUUGUACCGCCUGAUCAAGAACAAUAGGUGUUGUUAUAGGCGGCGAAGAGGAAUGAGUACUCUUCUGUGGCUGAAUGGCU
........................(((((((((....)))))))))(((...((((.((((.....)))).))...(((.((((((((.........)))))).)).)))))..))). (-22.88 = -23.04 +   0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:02:48 2006