Locus 6098

Sequence ID 2R_DroMel_CAF1
Location 19,178,993 – 19,179,089
Length 96
Max. P 0.700836
window9769

overview

Window 9

Location 19,178,993 – 19,179,089
Length 96
Sequences 5
Columns 113
Reading direction reverse
Mean pairwise identity 77.13
Mean single sequence MFE -27.48
Consensus MFE -12.72
Energy contribution -14.20
Covariance contribution 1.48
Combinations/Pair 1.05
Mean z-score -1.94
Structure conservation index 0.46
SVM decision value 0.35
SVM RNA-class probability 0.700836
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 19178993 96 - 20766785
UAUGCUGCUUU----------AUGCUGCGCCGAGCAAACUAAACAAGAAUCCUGCGAAAAGGAUGCCAUGAGGAAAUGAAA-------AGGAAAGAAGAAAAAAAAAGAAACU
.......((((----------(((((((.....)))............(((((......)))))).)))))))........-------......................... ( -13.60)
>DroSec_CAF1 62668 102 - 1
UAUGCUGCUUU----------AUGCUGCGGCGAGCAAACUAAACAAGAAUCCUGCGAAAAGGAUGCCAUGAGGACAUGAGGCUGCCUCGGCGAAGCAGAAGA-AAAAUAAACU
....(((((((----------..((((.(((.(((.............(((((......)))))..((((....))))..)))))).)))))))))))....-.......... ( -32.00)
>DroSim_CAF1 59789 102 - 1
UAUGCUGCUUU----------AUGCUGCGGCGAGCAAACUAAACAAGAAUCCUGCGAAAAGGAUGCCAUGAGGACAUGAGGCUGCCUCGGCGAAGCAGAAGA-AAAAUAAACU
....(((((((----------..((((.(((.(((.............(((((......)))))..((((....))))..)))))).)))))))))))....-.......... ( -32.00)
>DroEre_CAF1 70354 100 - 1
UGUGCUGCUUUGUGCUGCUUUAUGCUGCGGCGAGCAAACUAAACAAAAAUCCUGCGAAAAGGAUGCCAUGCUGGCAUGUUGCC---------AUG--UA-CG-AAAUAAAACU
.(((((((((...(((((........)))))))))).....((((...(((((......)))))(((.....))).))))...---------..)--))-).-.......... ( -28.00)
>DroYak_CAF1 70192 112 - 1
UAUGCUGCUUUAUGCUGCCUUGUGCUGCGGGGAGCAAACUAAACAAAAAUCCUGCGAAAAGGAUGCCAUGUAGCCAUGAAGCUGGCGCGGCGAAGCAUAAGA-AAAUAAAACU
..((((((....((((.(((((.....)))))))))......(((...(((((......)))))....))).((((......))))))))))..........-.......... ( -31.80)
>consensus
UAUGCUGCUUU__________AUGCUGCGGCGAGCAAACUAAACAAGAAUCCUGCGAAAAGGAUGCCAUGAGGACAUGAAGCUG_C_CGGCGAAGCAGAAGA_AAAAAAAACU
....(((((((............(((((.....)))............(((((......)))))))((((....)))).............)))))))............... (-12.72 = -14.20 +   1.48)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:02:46 2006