Locus 6097

Sequence ID 2R_DroMel_CAF1
Location 19,178,812 – 19,178,919
Length 107
Max. P 0.805023
window9768

overview

Window 8

Location 19,178,812 – 19,178,919
Length 107
Sequences 6
Columns 112
Reading direction forward
Mean pairwise identity 76.74
Mean single sequence MFE -28.90
Consensus MFE -10.95
Energy contribution -14.17
Covariance contribution 3.22
Combinations/Pair 1.24
Mean z-score -2.47
Structure conservation index 0.38
SVM decision value 0.63
SVM RNA-class probability 0.805023
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 19178812 107 + 20766785
CCGCAGAAUUUUAAUUUC-CCCCAAACUUUUGCCAGGCAACUUUGCUUGCAGAAUGCC---UGCGAAGGUAUGCGGGGCUCCCAAAGCUUCA-AUAUGGAUUUGAAAUUCCC
.....(((((((((.(((-(((((.((((((((.(((((..((((....)))).))))---))))))))).)).)))(((.....)))....-....))).))))))))).. ( -35.80)
>DroSec_CAF1 62489 105 + 1
CCGCAGAAUUUUAAUUUC-CCCCAAACUUUGGCCAGGCAACUUUGCCUGCAGAAUGCC---UGCGAAGGUAUGCCGGGCUC-CAAAGCUCCA-AUAUGGAU-UGAAAUUCCC
.....((((((((((((.-...........(((((((((....))))))....(((((---(....)))))))))(((((.-...))).)).-....))))-)))))))).. ( -32.70)
>DroSim_CAF1 59610 105 + 1
CCGCAGAAUUUUAAUUUC-CCCCAAACUUUGGCCAGGCAACUUUGCCUGCAGAAUGCC---UGCGAAGGUAUGCCGGGCUC-CAAAGCUCCA-AUAUGGAU-UGAAAUUCCC
.....((((((((((((.-...........(((((((((....))))))....(((((---(....)))))))))(((((.-...))).)).-....))))-)))))))).. ( -32.70)
>DroEre_CAF1 70193 87 + 1
CCGCAGAAUUUUAAUUUC-CCCCAAACUUUUGCUGCGAAACUUUGCUUGCAGAAUG---------------------GCUC-CAAAGCUCCA-AUAUGGAC-UGAAAUUCCC
.....((((((((...((-(.......((((((.((((....))))..)))))).(---------------------(((.-...))))...-....))).-)))))))).. ( -17.40)
>DroYak_CAF1 70009 109 + 1
CCGCAGAAUUUUAAUUUC-CCCCAAACUUUUGCUGGGGGACUUUGCUUGCAGAGCGACUGCUGCAAAGGUAUGCCGAGCUC-CAAAGCUCCAAAUAUGGAU-UGAAAUUCCC
.....(((((((((((((-(((((.........)))))))((((((..((((.....)))).))))))((((...(((((.-...)))))...)))).)))-)))))))).. ( -40.30)
>DroAna_CAF1 74427 97 + 1
CCACAGAAUUUUAAUUUUGUCUUCAACUUUUCCAAAGCAUCUCAACUUUGCGAAGGCC---CAAAAAGGUAAGCU---------AAGCUCCA-UUAUGGAU-UUUG-UUCCC
..(((((((.........((((((........(((((........))))).))))))(---((.((.((..(((.---------..))))).-)).)))))-))))-).... ( -14.50)
>consensus
CCGCAGAAUUUUAAUUUC_CCCCAAACUUUUGCCAGGCAACUUUGCUUGCAGAAUGCC___UGCGAAGGUAUGCCGGGCUC_CAAAGCUCCA_AUAUGGAU_UGAAAUUCCC
.....((((((((..................(((.((((.((((((................))))))...)))).))).........((((....))))..)))))))).. (-10.95 = -14.17 +   3.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:02:45 2006