Locus 6087

Sequence ID 2R_DroMel_CAF1
Location 19,156,156 – 19,156,276
Length 120
Max. P 0.747149
window9753

overview

Window 3

Location 19,156,156 – 19,156,276
Length 120
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 87.78
Mean single sequence MFE -26.03
Consensus MFE -19.40
Energy contribution -20.97
Covariance contribution 1.56
Combinations/Pair 1.12
Mean z-score -2.46
Structure conservation index 0.75
SVM decision value 0.47
SVM RNA-class probability 0.747149
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 19156156 120 - 20766785
UCAUUUCAAGGCAAUGAAUACUAAUCAAAGUCACGAAUUUGCAUCUAACAAAUUUGUAAAUUUAAUUACAGUUGGACAUGAAGUACAAGAGUAAUUUUGAAAAAGAAUACUUUUGCAAGU
((((((((((((..(((.......)))..)))(((((((((.......)))))))))..............))))).))))....((((((((.((((....)))).))))))))..... ( -23.80)
>DroSec_CAF1 39974 120 - 1
UCCUUCCCAGGCCAUGAUUACUAAUCAAAGCCAUGAAUUUGCAUCUAGCACAUUUUUAUAUUUAAUUAUAGUUGGUCAUGAACUGCAAAAGUAAUUUGGAAAAAGAAUACUUUUGCAAUA
........((..(((((((((((((.(((.....((((.(((.....))).)))).....))).))..))).))))))))..))(((((((((.(((......))).))))))))).... ( -25.80)
>DroSim_CAF1 40107 120 - 1
UCCCUCCCAGGCCAUGAUUACUAAUCAAAGCCAUGAGUUUGCAUCUAGAAAAUUUGUAAAUUUAAUUAUAGUUGGUCAUGAACUGCAAAAGUAAUUUGGAAAAAGAAUACUUUUGCAAGA
......((((((..((((.....))))..))).((((((((((...........))))))))))........)))........((((((((((.(((......))).))))))))))... ( -28.50)
>consensus
UCCUUCCCAGGCCAUGAUUACUAAUCAAAGCCAUGAAUUUGCAUCUAGCAAAUUUGUAAAUUUAAUUAUAGUUGGUCAUGAACUGCAAAAGUAAUUUGGAAAAAGAAUACUUUUGCAAGA
......((((((..((((.....))))..)))((((((((((.....))))))))))...............)))........((((((((((.(((......))).))))))))))... (-19.40 = -20.97 +   1.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:02:28 2006