| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 3,100,311 – 3,100,424 |
| Length | 113 |
| Max. P | 0.750924 |
| Location | 3,100,311 – 3,100,424 |
|---|---|
| Length | 113 |
| Sequences | 6 |
| Columns | 113 |
| Reading direction | forward |
| Mean pairwise identity | 77.58 |
| Mean single sequence MFE | -39.79 |
| Consensus MFE | -24.61 |
| Energy contribution | -24.28 |
| Covariance contribution | -0.33 |
| Combinations/Pair | 1.50 |
| Mean z-score | -1.59 |
| Structure conservation index | 0.62 |
| SVM decision value | 0.48 |
| SVM RNA-class probability | 0.750924 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 3100311 113 + 20766785 GGCCGCUACUUGAGGAACGCUUGGAGGCGAUUCUGCUGCGUUUUGCUGGCGUCUUUAAACGCGUUCGACUUCAGCUGGGCAGCUAUUUGCAGCAGUACGUUCUGCUUCUGGGU ..((.(.....).))...(((..(((((((..((((((((....(((.((((......))))(((((.(....).))))))))....)))))))).....)).)))))..))) ( -39.30) >DroVir_CAF1 16658 113 + 1 AACUUUUACUUGAGCAGCGCUUGCAGGCGAUUCUGUUGCGUUUUAUUGGCGUUUUGCGACGCGUGCGUUUUUAACUGCGCUGCCAGCUGCAGCAGCGCGUUUUGCUUUUGUGU ......(((..((((((.((..(((.(((..((.((.(((((.....)))))...))))))).)))..........(((((((........))))))))).))))))..))). ( -38.90) >DroGri_CAF1 16814 113 + 1 UAUUUUUACUUGAGAAACGCUUGCAGGCGAUUCUGUGCCGUUUUGCUGGCGUUUUUCGACGCGUGCGUUUUCAGCUGAGCUGCCAGCUGAAGCAGCGCGUUUUGCUUUUGUGU ......(((((((((((((((.(((((((......))))....))).)))))))))))).((((((..(((((((((......)))))))))..)))))).........))). ( -44.60) >DroWil_CAF1 15621 112 + 1 -CGAGCUACUUCAGGAAAGCUUGAAGACGAUUUUGUGGCGUUUUGCCGGUGUCUUUUGACGCGUGUGCCUUCAGUUGUGCGGCUAACUGCAGCAGAGCGUUCUUUUUCUGUGU -.((((..(((((((....)))))))..(.((((((.(((((..(((.(((((....)))))..(..(........)..)))).))).)).)))))))))))........... ( -33.70) >DroAna_CAF1 15110 113 + 1 ACACGCUACUUGAGGAAGGCUUGCAGGCGGUUCUCCUGCGACUUGCUGGCGUUUUUAAACGCGUUCGACUUUAGCUGCGCCGCCAGCUGCAGCAGUGCGUUUUGUUUUUGUGU ..((((.....(((((..(((....)))..)))))((((..(..(((((((((....)))((((.(.......)..)))).)))))).)..)))).))))............. ( -35.40) >DroPer_CAF1 13914 113 + 1 GCACGCUACUUGAGGAACGCUUGCAGGCGGUUCUGCUGCGACUUGCUCGCGUCUUUAAACGCGUGCGACUUCAGCUGAGCAGCCAGCUGCAGCAGCGCGUUUUGUUUCUGCGU ..((((.......(((((((.....(((.((((.((((.((.((((.(((((......))))).)))).)))))).)))).))).((((...)))))))))))......)))) ( -46.82) >consensus ACACGCUACUUGAGGAACGCUUGCAGGCGAUUCUGCUGCGUUUUGCUGGCGUCUUUAAACGCGUGCGACUUCAGCUGAGCAGCCAGCUGCAGCAGCGCGUUUUGCUUCUGUGU ................((((..(((((((...(((((((.........(((((....)))))..........(((((......))))))))))))..)).)))))....)))) (-24.61 = -24.28 + -0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:42:44 2006