| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 3,094,533 – 3,094,638 |
| Length | 105 |
| Max. P | 0.720835 |
| Location | 3,094,533 – 3,094,638 |
|---|---|
| Length | 105 |
| Sequences | 5 |
| Columns | 105 |
| Reading direction | reverse |
| Mean pairwise identity | 77.98 |
| Mean single sequence MFE | -41.26 |
| Consensus MFE | -29.64 |
| Energy contribution | -29.64 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.19 |
| Mean z-score | -1.52 |
| Structure conservation index | 0.72 |
| SVM decision value | 0.40 |
| SVM RNA-class probability | 0.720835 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 3094533 105 - 20766785 CCGCUGCGAAAUCCUGCUGGCUGCAGCCAGUUCUGCAUCGGGAUCGGGAUCGGGACUGGAACUGGGAUCAGGGCUGGGAUGCGCAGACGAGCAGGCGGCAGCUAA ..(((((.....((((((.(((((..(((((((((..((((..((((........))))..))))...))))))))).....)))).).))))))..)))))... ( -47.30) >DroSec_CAF1 9324 81 - 1 CCGCUGUGAGAUCCUGCUGGCUGCAGCCUGUUCUGCAUCGGG------AUCG------------------GGGCUGGGAUGCGCAGACGAGCAGGCGGCAGCUAA ..(((((..(..((((((.(((((..(((((((((...))))------).))------------------))((......)))))).).))))))).)))))... ( -34.80) >DroSim_CAF1 14843 87 - 1 CCGCUGUGAGAUCCUGCUGGCUGCAGCCAGUUCUGCAUCGGGAUCGGGAUCG------------------GGGCUGGGAUGCGCAGACGAGCAGGCGGCAGCUAA ..(((((..(..((((((.(((((..(((((((((.(((........)))))------------------))))))).....)))).).))))))).)))))... ( -38.30) >DroEre_CAF1 9523 99 - 1 CCGCUGCGAGAUCCUGCUGGCAGCAGCCAGUUCUGGAUCGGGAUUGG------AACUGGGACCGGGACCGGGGUUGGGAUGCGCAGACGAGCAGGCGGCAGUAAA ..(((((..(..((((((.((.(((.((((..((((.((((..((..------....))..))))..))))..))))..)))...).).))))))).)))))... ( -41.10) >DroYak_CAF1 9445 93 - 1 CCGCUGCGAGAUCCUGCUGGCUGCAGCCAGUUCUGGAUCGGGACUGG------AACUGCC------AUCGGGGUUGGGAUGCGCAGACGAGCAGGCGGCGGUGAA (((((((..(((((((.((((.....(((((((((...)))))))))------....)))------).)))))))....(((........))).))))))).... ( -44.80) >consensus CCGCUGCGAGAUCCUGCUGGCUGCAGCCAGUUCUGCAUCGGGAUCGG_AUCG__ACUG________A_C_GGGCUGGGAUGCGCAGACGAGCAGGCGGCAGCUAA ..(((((.....((((((.(((((..((.((((((...)))))).)).........................((......)))))).).))))))..)))))... (-29.64 = -29.64 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:42:43 2006