Locus 6067

Sequence ID 2R_DroMel_CAF1
Location 19,099,975 – 19,100,070
Length 95
Max. P 0.879592
window9720

overview

Window 0

Location 19,099,975 – 19,100,070
Length 95
Sequences 6
Columns 119
Reading direction forward
Mean pairwise identity 71.99
Mean single sequence MFE -22.77
Consensus MFE -9.34
Energy contribution -10.87
Covariance contribution 1.53
Combinations/Pair 1.25
Mean z-score -2.07
Structure conservation index 0.41
SVM decision value 0.91
SVM RNA-class probability 0.879592
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 19099975 95 + 20766785
GA----UUUUAUGAUCGCGGAAUGUUG--------UUACCAUGU----AGCACAUACUCAUU--------CGAGUGACAAAACAAUUUUCAUUCUGCGAAUGGCAUAAAAACAAUAGCU
..----(((((((.((((((((((.((--------((((...))----))))..(((((...--------.))))).............))))))))))....)))))))......... ( -26.60)
>DroSec_CAF1 42543 95 + 1
GA----UUUUAUGAUCGCCGAAUGUUG--------UUACCAUGU----AGCACACACUCACU--------CGAGUGACAAACCAAUUUUCAUUCUGCGAAUGGCAUAAGAACAAUAGCU
..----(((((((.((((.(((((.((--------((((...))----))))..(((((...--------.))))).............))))).))))....)))))))......... ( -24.90)
>DroSim_CAF1 43409 95 + 1
GA----UUUUAUGAUCGCCGAAUGUUG--------UUACCAUGU----AGCACACACUCAUU--------CGAGUGACAAACCAAUUUUCAUUCUGCGAAUGGCAUAAGAACAAUAGCU
..----(((((((.((((.(((((.((--------((((...))----))))..(((((...--------.))))).............))))).))))....)))))))......... ( -24.90)
>DroYak_CAF1 56392 111 + 1
UAUGUGUUUUAUGAUCGCGGAAUGUUG--------UUACCGUGUACAUAGCACACACUCAUUUGGCGAGCCGAGUGACAAACCAAUUUUCAUGCUGCGAAUGGCAUAAAAACAAUAGCU
..(((((.(((((..((((((((...)--------)).)))))..))))).))))).((((((((....))))))))........((((.(((((......))))).))))........ ( -29.80)
>DroAna_CAF1 38323 91 + 1
------UUUUAUGAUCGCUCCAUUCCGCCUUUAUUUGCCCAUUU----AACA-------AGU--------CGAGUGACAAACCAAUUUUCAUUCUACGAAUGGCAUAAAGACAAUA---
------(((((((......((((((.((........))......----....-------.((--------.((((((.((.....)).)))))).)))))))))))))))......--- ( -14.60)
>DroPer_CAF1 40376 86 + 1
AC----UUUUAUGAUCGCUCGA----------------CAAUGU----AACG--UACUCGCA---CGCAGCCAGUGACAAACCAAUUU-GGUCUUUCGAAUGGCAUAAAGACACUA---
..----(((((((.(((.((((----------------......----...(--((((.((.---....)).))).))..(((.....-)))...)))).))))))))))......--- ( -15.80)
>consensus
GA____UUUUAUGAUCGCCGAAUGUUG________UUACCAUGU____AGCACACACUCAUU________CGAGUGACAAACCAAUUUUCAUUCUGCGAAUGGCAUAAAAACAAUAGCU
......(((((((.((((.(((((.................(((.....)))..(((((............))))).............))))).))))....)))))))......... ( -9.34 = -10.87 +   1.53)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:01:56 2006