Locus 604

Sequence ID 2R_DroMel_CAF1
Location 3,082,158 – 3,082,255
Length 97
Max. P 0.850861
window1093

overview

Window 3

Location 3,082,158 – 3,082,255
Length 97
Sequences 6
Columns 103
Reading direction forward
Mean pairwise identity 76.29
Mean single sequence MFE -29.27
Consensus MFE -19.59
Energy contribution -17.35
Covariance contribution -2.24
Combinations/Pair 1.60
Mean z-score -1.47
Structure conservation index 0.67
SVM decision value 0.79
SVM RNA-class probability 0.850861
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 3082158 97 + 20766785
GCCUGAACAAAAGUCGGGCUGGUUCAGUGGUUGGGGAUGGGGCGGCGGAGCCAAGAAGGAUGACCAAACCACCAGUCAAAAACUUGGUAGGUAU------UUA
(((((.....((((..(((((((....((((((.......(((......)))........))))))....)))))))....))))..)))))..------... ( -30.06)
>DroPse_CAF1 1407 100 + 1
GCCUGUGCCGAAGACAGGCUGGCUGAGUGGCUGG---UGGGGCGGCGGAGCCAAGAAGGAGAACGAGGGCCAAGAUCAGAAUUUUGGCAAGAAACAAUGCUUA
((((((.......))))))(((((..((.(((..---...))).))..)))))..(((.(........((((((((....)))))))).........).))). ( -33.53)
>DroSec_CAF1 1460 97 + 1
GCCAGAACAAAAGUCUGGCUGGUUCAGUGGAUGGGGAUGGGGCGGCGGAGCCAAGAAGGAUGACCAAACCACCAGUCAAAAGCUGGGUAGGUAU------UUA
((((((.......))))))..(..((((.(((..((.((((((......))).....((....))...))))).)))....))))..)......------... ( -30.30)
>DroEre_CAF1 1452 97 + 1
GCCUGAAGAAAAGUCGGGUUGGUUCAGCGGUUGGGGAUGGGGUGGCGGAGCGAAGAAGGAUGACCAAACCGCUAGUCAAAAGCUUGGUAAGUAA------UUA
((((((.......))))))((..(.(((((((((..((....(.((...)).)......))..)).))))))))..))................------... ( -20.30)
>DroYak_CAF1 1485 97 + 1
GCCUGAACAAAAGUCGGGUUGGUUCAGCGGUUGGGGAUGGGGUGGCGGAGCCAAGAAGGAUGACCAAACUGCAAGUCAAAAGCUGGGCAAGUAA------UUA
((((((.......))))))..(((((((..((((.(.(((..(((((...((.....)).)).)))..))))...))))..)))))))......------... ( -27.90)
>DroPer_CAF1 1407 100 + 1
GCCUGUGCCGAAGACAGGCUGGCUGAGUGGCUGG---UGGGGCGGCGGAGCCAAGAAGGAGAACGAGGGCCAAGAUCAGAAUUUUGGCAAGAAACAAUGCUUA
((((((.......))))))(((((..((.(((..---...))).))..)))))..(((.(........((((((((....)))))))).........).))). ( -33.53)
>consensus
GCCUGAACAAAAGUCGGGCUGGUUCAGUGGUUGGGGAUGGGGCGGCGGAGCCAAGAAGGAUGACCAAACCACAAGUCAAAAGCUUGGCAAGUAA______UUA
((((((.......))))))((((((.((.(((........))).)).))))))............................(((.....)))........... (-19.59 = -17.35 +  -2.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:42:40 2006