| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 18,986,259 – 18,986,351 |
| Length | 92 |
| Max. P | 0.884317 |
| Location | 18,986,259 – 18,986,351 |
|---|---|
| Length | 92 |
| Sequences | 4 |
| Columns | 100 |
| Reading direction | reverse |
| Mean pairwise identity | 80.56 |
| Mean single sequence MFE | -24.10 |
| Consensus MFE | -16.40 |
| Energy contribution | -16.65 |
| Covariance contribution | 0.25 |
| Combinations/Pair | 1.15 |
| Mean z-score | -2.02 |
| Structure conservation index | 0.68 |
| SVM decision value | 0.93 |
| SVM RNA-class probability | 0.884317 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 18986259 92 - 20766785 -GUGGUCUGUUGGCACAAUCAGUGCUGGCAGAUUGCCACAUUAAAAA-------UUCGAUAUUAAGAUGUUUUCAGAUGGAAUUGACAUUUAGAAGUACC -(..((((((..((((.....))))..))))))..)...........-------..........((((((((((.....)))..)))))))......... ( -26.70) >DroSec_CAF1 84389 92 - 1 -GUGGUCUGUUGGCAGAAUCAGUGCUGGCAGAUUGCCACUUCAAAAA-------UGCGAAAUCAAGAAGUUUUCAGAUAGAAUUGACAUUUAGAAGUACC -(..((((((..(((.......)))..))))))..).(((((..(((-------(((((.(((............)))....))).))))).)))))... ( -24.30) >DroSim_CAF1 89074 92 - 1 -GUGGUCUGUUGGCACAAUCAGUGAUGGCAGAUUGCCACUUCAAAAA-------UGCGAAAUCAAGAAGUUUUCAGAUAGAAUUGACAUUUAGAAGUACC -(..(((((((..(((.....)))..)))))))..).(((((..(((-------(((((.(((............)))....))).))))).)))))... ( -20.70) >DroYak_CAF1 87794 86 - 1 CAUGGUCUGUUGGCGGCAUCAGUGCUGGCAGAUUGCUACUUCAAAAAUGCUUCU-UCCAAAUCAAGAAGUUUUCAG-------------UUAGAAGUACU ...(((((((..(((.(....))))..)))))))..((((((.((...((((((-(.......)))))))......-------------)).)))))).. ( -24.70) >consensus _GUGGUCUGUUGGCACAAUCAGUGCUGGCAGAUUGCCACUUCAAAAA_______UGCGAAAUCAAGAAGUUUUCAGAUAGAAUUGACAUUUAGAAGUACC .(((((((((((((((.....))))))))))))))).(((((.......................))))).............................. (-16.40 = -16.65 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:00:51 2006