Locus 603

Sequence ID 2R_DroMel_CAF1
Location 3,081,090 – 3,081,193
Length 103
Max. P 0.759576
window1092

overview

Window 2

Location 3,081,090 – 3,081,193
Length 103
Sequences 6
Columns 108
Reading direction reverse
Mean pairwise identity 74.76
Mean single sequence MFE -29.53
Consensus MFE -18.60
Energy contribution -17.63
Covariance contribution -0.97
Combinations/Pair 1.45
Mean z-score -1.40
Structure conservation index 0.63
SVM decision value 0.50
SVM RNA-class probability 0.759576
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 3081090 103 - 20766785
CGUUGGUUAUCUGCACCUGCAGAUUGUUAACGAUCUGCGCCGUUAGCUUUUCGGCAAAUCCUGCAUCUGCUUUGGGCUGAUCUGUGAAUGAGUAU-----AAUAUAUA
.(((((..((((((....))))))..)))))((((.((((((.........))))....((.((....))...)))).)))).............-----........ ( -29.30)
>DroPse_CAF1 391 103 - 1
CAUUGCUUAUCGUCACCUGCAGAUUGUUCACAAUCUGCGCCGUUAGUUUCUCGGCAAAUCCAGCGUCGGGCUUGGCUGUAUCUGAAAAG-AGAGGAGGCCA-GAU---
....((((..(((.....((((((((....))))))))((((.........)))).......)))..))))((((((...(((....))-).....)))))-)..--- ( -35.80)
>DroSec_CAF1 390 99 - 1
CGUUGGUUAUCUGCACCUGCAGAUUGUUCACGAUCUGCGCCGUUAGCUUUUCGGCAAAUCCUGCAUCUGCCUUGGGCUGAUCUGUAAGAGAGUAU-----A-UAU---
.........((((((...((((((((....))))))))...((((((((...((((...........))))..)))))))).))).)))......-----.-...--- ( -26.30)
>DroEre_CAF1 395 99 - 1
CGUUGGUUAUCUGCACCUGCAGAUUGUUAACGAUCUGUGCCGUUAGCUUUUCGGCAAAUCCAGCAUCUGCCUUGGGCUGAUCUGUGAAUGAAGAA-----A-GAU---
((((((..((((((....))))))..))))))((((.(((((.........)))))..(((((.(((.(((...))).)))))).))........-----)-)))--- ( -31.70)
>DroWil_CAF1 383 102 - 1
CAUUGGAGAUUUUCACUUGCAAAUUAUUGACAAUUUGAGCAGUUAGUUUCUCUGUGAAACCAGGAUCAGCUUUGGGCUUAUCUGCAAUAGAAUAC-----AAUAA-UU
.((((((((((...(((..((((((......))))))...))).))))))(((((.......((((.(((.....))).))))...)))))...)-----)))..-.. ( -18.30)
>DroPer_CAF1 391 103 - 1
CAUUGCUUAUCGUCACCUGCAGAUUGUUCACAAUCUGCGCCGUUAGUUUCUCGGCAAAUCCAGCGUCGGGCUUGGCUGUAUCUGAAAAG-AGAGGAGGCCA-GAU---
....((((..(((.....((((((((....))))))))((((.........)))).......)))..))))((((((...(((....))-).....)))))-)..--- ( -35.80)
>consensus
CAUUGGUUAUCUGCACCUGCAGAUUGUUCACAAUCUGCGCCGUUAGCUUCUCGGCAAAUCCAGCAUCUGCCUUGGGCUGAUCUGUAAAAGAGUAG_____A_GAU___
((..(((....(((....((((((((....))))))))((((.........)))).......)))...))).)).................................. (-18.60 = -17.63 +  -0.97)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:42:39 2006