Locus 6016

Sequence ID 2R_DroMel_CAF1
Location 18,899,446 – 18,899,551
Length 105
Max. P 0.903994
window9648

overview

Window 8

Location 18,899,446 – 18,899,551
Length 105
Sequences 6
Columns 105
Reading direction forward
Mean pairwise identity 79.28
Mean single sequence MFE -33.52
Consensus MFE -23.14
Energy contribution -23.83
Covariance contribution 0.69
Combinations/Pair 1.05
Mean z-score -1.94
Structure conservation index 0.69
SVM decision value 1.03
SVM RNA-class probability 0.903994
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 18899446 105 + 20766785
AGAUCCUGUCGUGCUCAAGGGAAGCUUCUCAAUGCUGGCCACGUGCAUGUGCAGGAUCUGAAGAGAGCGCAAAGCGUAAAUACAAGUAUAUAACGUCCGGUGUGG
((((((((((((((.(..((..(((........)))..))..).))))).))))))))).......((((...((((..(((....)))...))))...)))).. ( -34.40)
>DroSec_CAF1 3938 89 + 1
AGAUCCUGUCGUGCUCAAGGGAAGCUUCUCAAUGCUGGCCACGUGCAUGUGCAGGAUCUGAAGAGGACGCAAAGCGUAAAUACAAGUAU----------------
((((((((((((((.(..((..(((........)))..))..).))))).))))))))).......((((...))))............---------------- ( -30.30)
>DroSim_CAF1 4890 105 + 1
AGAUCCUGUCGUGCUCAAGGGAAGCUUCUCAAUGCUGGCCACGUGCAUGUGCAGGAUCUGAAAAGGACGCAAAGUGUAAAUACAAGUAUAUAACGUCCGGUGUGG
((((((((((((((.(..((..(((........)))..))..).))))).))))))))).....(((((....(((((........)))))..)))))....... ( -35.70)
>DroEre_CAF1 4937 105 + 1
AGAUCCUGUCGUGCUCAAGGGAAGCUUCUCAAUGCUGGCCACGUGCAUGUGCAGGAUCUGAAAUGGCAGAAAAGCGUAAACACACGGAUAUAACGUCCAGUGCGG
((((((((((((((.(..((..(((........)))..))..).))))).)))))))))......((......)).....(.(((((((.....)))).))).). ( -35.50)
>DroYak_CAF1 4901 105 + 1
AGAUCCUGUCGUGCUUAGGGGCAGCUUCUCAAUGCUGGCCACGUGCAUGUGCAGGAUCUGAAAAGGCAGCACAGCGUAAAUACAAGGAUAUAACGUCCUGUGUGG
((((((((((((((....((.((((........)))).))....))))).)))))))))......((......))....(((((.((((.....))))))))).. ( -41.60)
>DroMoj_CAF1 5308 94 + 1
GGAGCCGGUGGUGCUGAGCGGCAGCUUCUCAAUGCUGGCAAUGUGCAUGUGCAGAAUCUGAAAUGAGGGCGAGUCGUUAAUAUAGACAC-----------UAGUA
...((..(((...(((((((((.(((.((((((((.........))))...(((...)))...)))))))..))))))....))).)))-----------..)). ( -23.60)
>consensus
AGAUCCUGUCGUGCUCAAGGGAAGCUUCUCAAUGCUGGCCACGUGCAUGUGCAGGAUCUGAAAAGGACGCAAAGCGUAAAUACAAGUAUAUAACGUCC_GUGUGG
((((((((((((((....((..(((........)))..))....))))).))))))))).............................................. (-23.14 = -23.83 +   0.69)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:00:29 2006