| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 18,883,928 – 18,884,030 |
| Length | 102 |
| Max. P | 0.871985 |
| Location | 18,883,928 – 18,884,030 |
|---|---|
| Length | 102 |
| Sequences | 6 |
| Columns | 117 |
| Reading direction | forward |
| Mean pairwise identity | 77.33 |
| Mean single sequence MFE | -49.58 |
| Consensus MFE | -31.10 |
| Energy contribution | -31.39 |
| Covariance contribution | 0.29 |
| Combinations/Pair | 1.37 |
| Mean z-score | -1.76 |
| Structure conservation index | 0.63 |
| SVM decision value | 0.87 |
| SVM RNA-class probability | 0.871985 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 18883928 102 + 20766785 CGCUGGCCAUGGACGAGUUGGAGAGCUUGCGGGUCCUGGAGGUGGC------------GCCGUUCAGGGAUUGCGUCG---AUCGUCCGCGCAGAGCGGAUGCACUUGUGGCCGGCA .(((((((((.((((((((....)))))((((..((((((((....------------.)).))))))..))))))).---..(((((((.....))))))).....))))))))). ( -51.00) >DroSim_CAF1 6584 102 + 1 CGCUGGCCAUGGACGAGUUUGAGAGUUUGCGGGUCCUGGAGGUGGC------------GCCGUUCAGGGAUUGGGUCG---AUCGCCCGCGCAGCGCGGAUGCACUUGUGGCCGGCA .((((((((..(....(((((...((((((((((((((((((....------------.)).))))))(((((...))---)))))))))).))).)))))....)..)))))))). ( -49.30) >DroEre_CAF1 7899 102 + 1 CGCUGGCCAUGGAUGAGUUGGAGAGCUUGCGCGACCUGGAGGUGGA------------GCCGUUUAGGGAUUGGGUCG---AGCGUCCGCGCAGCGCCGAUGCACUUGUGGCCGGCA .((((((((..(.((.(((((...(((.((((..((((((((....------------.)).)))))).....((.(.---...).))))))))).))))).)).)..)))))))). ( -50.40) >DroWil_CAF1 11120 111 + 1 CGCUGGCCAUUGACGAAUUGGACAGUUUUCGUGUCCUUGGUACCGC------ACCUAGACCAUUCAAAGACUGUGUGGAGGAACGUCCUCUCAGCGAGGAGGCACUAGUGGCCGGUA .((((((((((........(((((.......)))))..(((.((..------.(((...((((.((.....)).)))))))....(((((.....))))))).))))))))))))). ( -38.60) >DroYak_CAF1 7909 102 + 1 CGCUGGCCAUGGACGAGUUGGAGAGCUUGCGCGACCUGUUGGUGGA------------GCCGUUUAGGGAUUGGGUCG---AGCGGCCGCGCAGCGCGGAUGCACUUGUGGCCGGCA .((((((((..(....(((.(...(((.((((((((....)))...------------(((((((...(((...))))---)))))))))))))).).)))....)..)))))))). ( -47.20) >DroAna_CAF1 9606 117 + 1 CGCUGGCCAUCGACGAGUUGGACAACUUCCUCGUCCUGGGCGUGGCUCCGCCUCCGAGGCCAUUGAGGGACUGGGUGGAGGAGCGUCCCCGCAGCGACGACGCACUGGUGGCCGGCA .((((((((((((((((..((....))..))))))..((((((.(((((.((.((.((.((......)).)).)).)).)))))(((........))).)))).)))))))))))). ( -61.00) >consensus CGCUGGCCAUGGACGAGUUGGAGAGCUUGCGCGUCCUGGAGGUGGC____________GCCGUUCAGGGAUUGGGUCG___AGCGUCCGCGCAGCGCGGAUGCACUUGUGGCCGGCA .((((((((((((((((((....)))))....(((((...(((((..............)))))..)))))...)))......(((((((.....)))))))....)))))))))). (-31.10 = -31.39 + 0.29)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:00:24 2006