| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 18,856,516 – 18,856,615 |
| Length | 99 |
| Max. P | 0.556884 |
| Location | 18,856,516 – 18,856,615 |
|---|---|
| Length | 99 |
| Sequences | 6 |
| Columns | 106 |
| Reading direction | reverse |
| Mean pairwise identity | 85.31 |
| Mean single sequence MFE | -31.73 |
| Consensus MFE | -23.21 |
| Energy contribution | -23.93 |
| Covariance contribution | 0.72 |
| Combinations/Pair | 1.08 |
| Mean z-score | -2.29 |
| Structure conservation index | 0.73 |
| SVM decision value | 0.05 |
| SVM RNA-class probability | 0.556884 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 18856516 99 - 20766785 GAAG----GACUCAGGAGGAGGGCAGCCC---GGCAAAGUAAAUGUGCAAACAUUUAUUUAUGUGGCCUGCCAAGGAGCACUUUAAAGCUCUGCAAUCGCCCUGAU ....----...(((((..((.(((((.((---(.((((((((((((....)))))))))).))))).)))))..(((((........)))))....))..))))). ( -36.10) >DroGri_CAF1 39123 99 - 1 -----CU-CGUCCAUACACACUGCAGACCGAAGGUAAAGUAAAUGUGCAAACAUUUAUUUAUGUG-CCAGCCAUGGAGCACUUUAAGGCACUUCAAUUGCCCUGAU -----..-..........((..((((...(((((((((((((((((....))))))))))...))-)).(((.((((....)))).)))..)))..))))..)).. ( -21.70) >DroSec_CAF1 30664 99 - 1 GAAU----GGCUCAGGAGGAGGGCAGCCC---GGCAAAGUAAAUGUGCAAACAUUUAUUUAUGUGGCCUGCCAAGGAGCACUUUAAAGCUCUGCAAUCGCCCUGAU ....----...(((((..((.(((((.((---(.((((((((((((....)))))))))).))))).)))))..(((((........)))))....))..))))). ( -36.10) >DroSim_CAF1 30925 99 - 1 GAAU----GGCUCGGGAGGAGGGCAGCCC---GGCAAAGUAAAUGUGCAAACAUUUAUUUAUGUGGCCUGCCAAGGAGCACUUUAAAGCUCUGCAAUCGCCCUGAU ....----...(((((..((.(((((.((---(.((((((((((((....)))))))))).))))).)))))..(((((........)))))....))..))))). ( -35.40) >DroEre_CAF1 34275 95 - 1 GG------AACUCA-AAG-UGGGUAGCCC---GGCAAAGUAAAUGUGCAAACAUUUAUUUAUGUGGCCUGCCAUGGAGCACUUUAAAGCUCUGCAAUCGCCCUGAU ..------...(((-..(-(((((((.((---(.((((((((((((....)))))))))).))))).)))))..(((((........))))).....)))..))). ( -29.90) >DroYak_CAF1 31194 102 - 1 GGAGCUGGAACUCA-AAGGAGGGCAGCCC---GGCAAAGUAAAUGUGCAAACAUUUAUUUAUGUGGCCUGCCAAGGAGCACUUUAAAGCACUGCAAUCGCCCUGAU ((.((((...(((.-...)))..))))))---(((.((((((((((....)))))))))).((..((((....))).((........)).)..))...)))..... ( -31.20) >consensus GAA_____GACUCAGAAGGAGGGCAGCCC___GGCAAAGUAAAUGUGCAAACAUUUAUUUAUGUGGCCUGCCAAGGAGCACUUUAAAGCUCUGCAAUCGCCCUGAU ...................(((((........((((((((((((((....))))))))))........))))..(((((........)))))......)))))... (-23.21 = -23.93 + 0.72)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:00:02 2006