Locus 5997

Sequence ID 2R_DroMel_CAF1
Location 18,850,036 – 18,850,130
Length 94
Max. P 0.922004
window9619

overview

Window 9

Location 18,850,036 – 18,850,130
Length 94
Sequences 5
Columns 94
Reading direction forward
Mean pairwise identity 93.17
Mean single sequence MFE -15.65
Consensus MFE -14.87
Energy contribution -15.31
Covariance contribution 0.44
Combinations/Pair 1.05
Mean z-score -1.34
Structure conservation index 0.95
SVM decision value 1.14
SVM RNA-class probability 0.922004
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 18850036 94 + 20766785
UUUUCUAUUAAUUGUAUCAAUUUCAAUUUAGCAUGCUCCACCGUGCUAAACUCUCAAUCGGAUUAGCAUUAAUCAUCAUCUCCGGGCGAUUGCC
........(((((((...........(((((((((......))))))))).......(((((..................)))))))))))).. ( -16.87)
>DroSec_CAF1 24192 91 + 1
UUUUCUAUUAAUUGUAUCAAUUUCAAUUUAGCAUGCUCCACCGUGCUAAACUCUCAAUAGGAUUAGCUUU---CAUCAUCUCCGGGCGAUUGCC
..((((((((((((...)))))....(((((((((......))))))))).....)))))))...((..(---(.((......))..))..)). ( -15.50)
>DroSim_CAF1 24444 91 + 1
UUUUCUAUUAAUUGUAUCAAUUUCAAUUUAGCAUGCUCCACCGUGCUAAACUCUCAAUCGGAUUAGCUUU---CAUCAUCUCCGGGCGAUUGCC
........(((((((...........(((((((((......))))))))).......(((((........---.......)))))))))))).. ( -17.06)
>DroEre_CAF1 27847 91 + 1
UUUUCUAUUAAUUGUUUUAAUUUCAAUUUAGCAUGCAACAACGUGCUUAACUCUCAAUCGGAUUAGCUUU---CAUCAUCUCCGGGCGAUUGAC
.......((((((((..............((((((......))))))..........(((((........---.......))))))))))))). ( -14.66)
>DroYak_CAF1 24380 91 + 1
UUUUCUAUUAAUUGUUUUAAUUUCAAUUUAGCAUGCUCCAACGUGCUUAACUCUCAAUCGGAUUAGCUUU---CAUCAUCUCCGGGCAAUUGGC
.......((((((((..............((((((......))))))..........(((((........---.......))))))))))))). ( -14.16)
>consensus
UUUUCUAUUAAUUGUAUCAAUUUCAAUUUAGCAUGCUCCACCGUGCUAAACUCUCAAUCGGAUUAGCUUU___CAUCAUCUCCGGGCGAUUGCC
........(((((((...........(((((((((......))))))))).......(((((..................)))))))))))).. (-14.87 = -15.31 +   0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:59:59 2006