| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 18,817,552 – 18,817,670 |
| Length | 118 |
| Max. P | 0.962724 |
| Location | 18,817,552 – 18,817,670 |
|---|---|
| Length | 118 |
| Sequences | 4 |
| Columns | 118 |
| Reading direction | forward |
| Mean pairwise identity | 84.35 |
| Mean single sequence MFE | -48.42 |
| Consensus MFE | -33.77 |
| Energy contribution | -36.89 |
| Covariance contribution | 3.12 |
| Combinations/Pair | 1.05 |
| Mean z-score | -2.62 |
| Structure conservation index | 0.70 |
| SVM decision value | 1.54 |
| SVM RNA-class probability | 0.962724 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 18817552 118 + 20766785 AUCCGCAGCGGCAAUUCGCAGUCUCCGAUUCCAUUGGCAUUUCAUGGUUAGUGGGUGAGAGUGGUCGCAGCGGCACUUUCGCCGGCCACCCAAGUGGAAUCCAAUGGACCUUCUGUGG ..(((((((((..((.....))..)))..((((((((.((((((((((..((.((((((((((.(((...))))))))))))).)).)))...)))))))))))))))....)))))) ( -48.40) >DroSec_CAF1 9456 110 + 1 AUCCGCAGCGGCAAG--------GCCGAUUCCAUUGGCAUUUCAUUGUUAGUGGGUGAGAGUGGUCGCGGCGACACUUUCGCCGGCCACCCAAGUGGAAUCCAAUGGACCUUCUGUGG ..((((((((((...--------))))..((((((((.((((((((....((.((((((((((.(((...))))))))))))).))......))))))))))))))))....)))))) ( -50.80) >DroEre_CAF1 7768 114 + 1 GUCCGCAGUGGCAAGGC-CAGUCUCCGGUUCCAUUGGCAGGUCAUGGUUAGUGGGUGAGAGUGGCUGCGG---CACUUUCGCCGGCCACCCAAGUGGAAUCCAAUGGACCUUCUGUGG ..((((((((((...))-))......(((.(((((((.(..(((((((..((.((((((((((.(...).---)))))))))).)).)))...))))..)))))))))))..)))))) ( -49.20) >DroYak_CAF1 8234 103 + 1 ------------AAGGC-CAGUCUCCGAUUCCAUUGGCAUUUCAUGGUUAGUGGGUGAGAGUGGCUGCGGC--CACUUUCGCCGGCCACCCAAGUGGAAUGCAAUGGACCUUCUGUGG ------------.....-...........(((((((.(((((((((((..((.((((((((((((....))--)))))))))).)).)))...)))))))))))))))((......)) ( -45.30) >consensus AUCCGCAGCGGCAAGGC_CAGUCUCCGAUUCCAUUGGCAUUUCAUGGUUAGUGGGUGAGAGUGGCCGCGGC__CACUUUCGCCGGCCACCCAAGUGGAAUCCAAUGGACCUUCUGUGG ..(((((((((.............)))..((((((((.((((((((((..((.((((((((((((....))..)))))))))).)).)))...)))))))))))))))....)))))) (-33.77 = -36.89 + 3.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:59:39 2006