| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 18,813,488 – 18,813,598 |
| Length | 110 |
| Max. P | 0.915068 |
| Location | 18,813,488 – 18,813,598 |
|---|---|
| Length | 110 |
| Sequences | 5 |
| Columns | 111 |
| Reading direction | forward |
| Mean pairwise identity | 76.60 |
| Mean single sequence MFE | -38.30 |
| Consensus MFE | -24.38 |
| Energy contribution | -24.38 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.21 |
| Mean z-score | -1.93 |
| Structure conservation index | 0.64 |
| SVM decision value | 1.10 |
| SVM RNA-class probability | 0.915068 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 18813488 110 + 20766785 GCACUUUGAUGUUGCCUCAUGUUGCACAAGCAGCAUGCUCAGCAG-AGGGGGGGAUUCGGUGGCGAUUUAGGUGGCUCAGGGGGGCUUAGGGGUACCUGAAGGCAAGGAAA ...(((((.(((..((.((((((((....))))))))(((....)-))..........))..))).((((((((.((((((....))).))).))))))))..)))))... ( -38.60) >DroSec_CAF1 5352 100 + 1 GCACUUUGAUGUUGCCUCAUGUUGCACAAGCAGCAUGCUCAGCGG-AGGGGGGACUCUUUUGGGGGCUCAAUGGGCU----------CAGGGGCUUCUGAAGGCAAGGAAA ...(((((..(((.(((((((((((....))))))))(((....)-))))).))).((((..(((((((..((....----------)).)))))))..)))))))))... ( -36.50) >DroSim_CAF1 5391 110 + 1 GCACUUUGAUGUUGCCUCAUGUUGCACAAGCAGCAUGCUCAGCGG-AGGGGGGAUUCUUUUGGGGGCUCAAGGGGCUCAGGGAGGCUCAGGGGCUUCUGAAGGCAAGGAAA ...(((((..(((.(((((((((((....))))))))(((....)-))))).))).((((..(((((((..(((.(((...))).)))..)))))))..)))))))))... ( -43.30) >DroEre_CAF1 3885 98 + 1 GCACUUUGAUGUUGCCUCAUGUUGCACAAGCAGCAUGGCCGGGGUAAGAGGGGAUUC-GG---GGGCUUUGGGGGCUCAGG---------GGGCUCCUGAAGGCGAGGAAA ((.((((((.(((.(((((((((((....))))))).((....))..)))).)))))-))---)).(((..((((((....---------.))))))..)))))....... ( -41.60) >DroYak_CAF1 4230 91 + 1 GCACUUUGAUGUUGCCUCAUGUUGCACAAGCAGCAUG---------AAGGGGGAUUC-GGUG-GGGUUUUGGGGACUCGGG---------GGACUCCUGAAGGCAAGGAAA .........(.((((((((((((((....))))))))---------)(((((..(((-....-(((((.....))))).))---------)..)))))...))))).)... ( -31.50) >consensus GCACUUUGAUGUUGCCUCAUGUUGCACAAGCAGCAUGCUCAGCGG_AGGGGGGAUUC_GGUGGGGGCUUAGGGGGCUCAGG_______AGGGGCUCCUGAAGGCAAGGAAA .........(.((((((((((((((....))))))))..............................(((((((.((.............)).))))))))))))).)... (-24.38 = -24.38 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:59:36 2006