Locus 598

Sequence ID 2R_DroMel_CAF1
Location 3,056,117 – 3,056,208
Length 91
Max. P 0.767516
window1081

overview

Window 1

Location 3,056,117 – 3,056,208
Length 91
Sequences 5
Columns 104
Reading direction reverse
Mean pairwise identity 78.20
Mean single sequence MFE -38.58
Consensus MFE -27.12
Energy contribution -28.96
Covariance contribution 1.84
Combinations/Pair 1.07
Mean z-score -1.63
Structure conservation index 0.70
SVM decision value 0.52
SVM RNA-class probability 0.767516
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 3056117 91 - 20766785
GCUGGCACCCCUCUCCUCCUUUGGACUCUCCGCUCACACCCACCAUCCGCCAAGGUGAGUGAGCAAGGCGGUG-AUGAGAAGGGUUGGCGGG------------
((..((.((.(((.((.((((.((.....))((((((...((((.........)))).)))))))))).))..-..)))..))))..))...------------ ( -34.80)
>DroSec_CAF1 11388 90 - 1
GCUGGCAUCCCUCUCCUCCUUAGGACUCUCCGCUCACACCCACCAUCCGCCAAGGUGAGUGAGCAAGGCGGUU-AUGAGGAGGGU-UGCGGG------------
.((.(((.((((((((.((((.((.....))((((((...((((.........)))).)))))))))).))..-....)))))).-))).))------------ ( -37.50)
>DroSim_CAF1 6433 92 - 1
GCUGACACCCCUCUCCUCCUUAGGACUCUCCGCUCACACCCACCAUCCGCCAAGGUGAGUGAGCAAGGCGGUAGAUGAGGAGGUUUUGGGGG------------
.......((((...((((((((..(((((..((((((...((((.........)))).))))))..)).)))...))))))))....)))).------------ ( -38.80)
>DroEre_CAF1 5754 97 - 1
GCUGGCUACCCUCCCCUCCACA-GACUCUCCGCCCAC---CACCCCC-GUCAAGGUGAGUGAGCAAGGCGGUG-AUGAGGAGGCUUGAGGGGGUACCAUCCC-C
..(((.(((((((((((((.((-...((.((((((((---((((...-.....)))).))).....))))).)-))).)))))...).))))))))))....-. ( -40.50)
>DroYak_CAF1 5777 99 - 1
GCUGGCUGCCCUCCCCUCCUCA-GAAUCUCCGCCCAC---CACCCCCUGCCAAGGUGAGUUAGCAAGGCGGUG-AUGAGGAGGCUUGCGGGGGUACCAUCCCCC
..(((.((((((((((((((((-...((.((((((((---(............)))).(....)..))))).)-)))))))))...).))))))))))...... ( -41.30)
>consensus
GCUGGCACCCCUCUCCUCCUUAGGACUCUCCGCUCACACCCACCAUCCGCCAAGGUGAGUGAGCAAGGCGGUG_AUGAGGAGGCUUGGGGGG____________
........(((((.((((((((....((.((((((((...((((.........)))).))))))..)).))....))))))))...)))))............. (-27.12 = -28.96 +   1.84)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:42:28 2006