Locus 5976

Sequence ID 2R_DroMel_CAF1
Location 18,808,831 – 18,808,951
Length 120
Max. P 0.748480
window9587

overview

Window 7

Location 18,808,831 – 18,808,951
Length 120
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 81.27
Mean single sequence MFE -26.53
Consensus MFE -17.82
Energy contribution -18.60
Covariance contribution 0.78
Combinations/Pair 1.12
Mean z-score -1.93
Structure conservation index 0.67
SVM decision value 0.47
SVM RNA-class probability 0.748480
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 18808831 120 + 20766785
AUCGAAGUGCUCAAGCCACUUGAAUAUAUGGAAUCCAUUAUUCGGAAAAUCCAUUAGUAUAUUUCAGCGGAGGACUUGAAGCUACCAAAUUUCCGUUCUACACUUAAAUUGAUGCAACAA
.......(((((((.((.((.(((((((((((.(((.......)))...))))....))))))).)).))(((((..((((........)))).))))).........)))).))).... ( -22.40)
>DroSec_CAF1 729 107 + 1
AUCGAAGUGGUAAAGCUACUUGAAAAUAUGGAAACCAUUAUUCGGAAAAUCCAUUAGUAUAGUUCAGCGGAGGCCACUCUGCUGGCCA-------------ACUAACAUGAAUGCAACAA
.((.((((((.....))))))))......(....)...(((((((.....)).(((((...(..((((((((....))))))))..).-------------)))))...)))))...... ( -28.60)
>DroSim_CAF1 789 107 + 1
AUCGAAGUGGUGAAGCUACUUGAAAAUAUGGAAACCAUUAUUCGGAAAAUCCAUUAGUAUAGUUCAGCGGAGGCCACUCUGCUGGCCA-------------ACUAACAUGAAUGCAACAA
.....((((((....(((..(....)..)))..))))))((((((.....)).(((((...(..((((((((....))))))))..).-------------)))))...))))....... ( -28.60)
>consensus
AUCGAAGUGGUAAAGCUACUUGAAAAUAUGGAAACCAUUAUUCGGAAAAUCCAUUAGUAUAGUUCAGCGGAGGCCACUCUGCUGGCCA_____________ACUAACAUGAAUGCAACAA
....((((((.....))))))(((...((((...))))..)))((.....)).........(..((((((((....))))))))..)................................. (-17.82 = -18.60 +   0.78)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:59:28 2006