Locus 5966

Sequence ID 2R_DroMel_CAF1
Location 18,797,102 – 18,797,197
Length 95
Max. P 0.718274
window9570

overview

Window 0

Location 18,797,102 – 18,797,197
Length 95
Sequences 6
Columns 95
Reading direction reverse
Mean pairwise identity 91.11
Mean single sequence MFE -25.43
Consensus MFE -22.64
Energy contribution -23.08
Covariance contribution 0.44
Combinations/Pair 1.07
Mean z-score -1.41
Structure conservation index 0.89
SVM decision value 0.39
SVM RNA-class probability 0.718274
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 18797102 95 - 20766785
GUGAUGCCAAAGCUGAUCCUUAGCUUGUGUUGUAACAAGUUAAUUGAAUUUGCACUCAGCCAAGCGUCAUGCAUUGGGGCAUCAUGAGCUUACGA
((((((((.((((((((.....(((((.((((...((((((.....))))))....))))))))))))).)).))..)))))))).......... ( -29.20)
>DroVir_CAF1 23312 88 - 1
--GAUGCUAAAGCUGAUCCUGAGAUUGUGUUGUAACAAGUUAAUUGAAUUUGCACUCAACCAAGCGUCAUGCAUCG--GCAUCACGAGCU---GA
--(((((..(.((((((.((.....((.((((...((((((.....))))))....)))))))).)))).)).)..--))))).......---.. ( -20.00)
>DroEre_CAF1 16800 95 - 1
CUGAUGCCAAAGCUGAUCCUUAGCUUGUGUUGUAACAAGUUAAUUGAAUUUGCACUCAGCCAAGCGUCAUGCAUUGGGGCAUCAUGAGCUUACGA
.(((((((.((((((((.....(((((.((((...((((((.....))))))....))))))))))))).)).))..)))))))........... ( -27.80)
>DroYak_CAF1 16777 95 - 1
CUGAUGCCAAAGCUGAUCCUUAGCUUGUGUUGUAACAAGUUAAUUGAAUUUGCACUCAGCCAAGCGUCAUGCAUUGGGGCAUCAUGAGCUUACGA
.(((((((.((((((((.....(((((.((((...((((((.....))))))....))))))))))))).)).))..)))))))........... ( -27.80)
>DroMoj_CAF1 21978 88 - 1
--GAUGCUAAAGCUGAUCCUGAGAUUGUGUUGUAACAAGUUAAUUGAAUUUGCACUCAGCCAAGCGUCAUGCAUCG--GCAUCGCCAGCU---GA
--(((((....(((....(((((.((((......))))((...........)).)))))...))).....)))))(--((...)))....---.. ( -21.90)
>DroAna_CAF1 3926 95 - 1
CUGAUGCUAAAGCUGAUCCCGAGCUUGUGUUGUAACAAGUUAAUUGAAUUUGCACUCAGCCAAGCGUCAUGCAUUGGGGCAUCAUGAGCUUACAA
.(((((((.((((((((.....(((((.((((...((((((.....))))))....))))))))))))).)).))..)))))))........... ( -25.90)
>consensus
CUGAUGCCAAAGCUGAUCCUGAGCUUGUGUUGUAACAAGUUAAUUGAAUUUGCACUCAGCCAAGCGUCAUGCAUUGGGGCAUCAUGAGCUUACGA
..((((((...((((((.....(((((.((((...((((((.....))))))....))))))))))))).)).....))))))............ (-22.64 = -23.08 +   0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:59:13 2006