Locus 5958

Sequence ID 2R_DroMel_CAF1
Location 18,775,394 – 18,775,501
Length 107
Max. P 0.991302
window9558

overview

Window 8

Location 18,775,394 – 18,775,501
Length 107
Sequences 5
Columns 107
Reading direction forward
Mean pairwise identity 92.15
Mean single sequence MFE -27.48
Consensus MFE -23.06
Energy contribution -23.30
Covariance contribution 0.24
Combinations/Pair 1.12
Mean z-score -2.21
Structure conservation index 0.84
SVM decision value 2.26
SVM RNA-class probability 0.991302
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 18775394 107 + 20766785
AACAAAAGCCGGCUGGAAAACUGAAGUAGAAGUGUCUUGAACCCGCUCAAGGACGCGAAUAAAAGUCAACACAUAAAAUGUUGAGAGUCAACAGGGAAAGUUGGCAG
.......(((((((......(((........(((((((((......)))).))))).........((((((.......)))))).......)))....))))))).. ( -27.90)
>DroSec_CAF1 138137 105 + 1
AACAAAAGCCGGCUGGAAAACUGAAGAGGAAGUGUCUUGAACCCGCUCAAGGCCGCUGAUAAAAGUCAACAC--AAAAUGUUGAGAGUCAACAGGGAAAGUUGGCAA
.......(((((((......(((..((...((((((((((......)))))).))))........((((((.--....))))))...))..)))....))))))).. ( -29.10)
>DroSim_CAF1 140045 105 + 1
AACAAAAGCCGGCUGGAAAACUGAAGAGGAAGUGUCUUGAACCCGCUCAAGGCCGCUGAUAAAAGUCAACAC--AAAAUGUUGAGAGUCAACAGGGAAAGUUGGCAA
.......(((((((......(((..((...((((((((((......)))))).))))........((((((.--....))))))...))..)))....))))))).. ( -29.10)
>DroEre_CAF1 139155 103 + 1
AACAAA-GCCGGCUGGCAAACUGAAGU-CAAGUGUCUUGAACCCGCUCAAGGCCGCUGAUAAAAGUCAACGC--ACAAUGUUGAGAGUCAACAGGGAAAGUUGGUAA
......-(((((((..(...(((..((-((.(((((((((......)))))).))))))).....((((((.--....)))))).......))).)..))))))).. ( -29.20)
>DroYak_CAF1 140474 104 + 1
AACAAA-ACCGGCUGGCAAACUCAAGAGGAAGUGUCUUCAACCCGCUCAAGGCCGCUGAUAAAAGUCAACAC--AAAAUGUUGAGAGUCAACAGGGAAAGUUGCUAA
......-..((((.(((........(((((....)))))....(......)))))))).....((.((((..--....(((((.....)))))......)))))).. ( -22.10)
>consensus
AACAAAAGCCGGCUGGAAAACUGAAGAGGAAGUGUCUUGAACCCGCUCAAGGCCGCUGAUAAAAGUCAACAC__AAAAUGUUGAGAGUCAACAGGGAAAGUUGGCAA
.......(((((((......(((.......((((((((((......)))))).))))........((((((.......)))))).......)))....))))))).. (-23.06 = -23.30 +   0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:59:01 2006