Locus 5928

Sequence ID 2R_DroMel_CAF1
Location 18,694,787 – 18,694,886
Length 99
Max. P 0.986269
window9512

overview

Window 2

Location 18,694,787 – 18,694,886
Length 99
Sequences 5
Columns 101
Reading direction forward
Mean pairwise identity 93.11
Mean single sequence MFE -26.33
Consensus MFE -22.38
Energy contribution -22.82
Covariance contribution 0.44
Combinations/Pair 1.18
Mean z-score -2.02
Structure conservation index 0.85
SVM decision value 2.04
SVM RNA-class probability 0.986269
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 18694787 99 + 20766785
CAGUGUUCGA-AAUAAAGUCGGUGAAAAGGCCGAAAACACUUUGACUGAUUUGUAUGUGGAGCACACAUGGAGGUGCAUGGG-AGGUGGAACAAGAAGUUU
...(((((..-.......(((((......)))))...((((((..(((((((.((((((.....)))))).)))).)).).)-))))))))))........ ( -26.90)
>DroSec_CAF1 58266 100 + 1
CAGUGUUCGA-AAUAAAGUCGGUGAAAAGGCCGAAAACACUUUGACUGAUUUGUAUGUGGAGCACACAUGGAGGUGCACAGGUGGGUGGAACGAAAAGUUU
...(((((..-.......(((((......)))))...(((((...(((((((.((((((.....)))))).))))...)))..))))))))))........ ( -26.70)
>DroSim_CAF1 58691 99 + 1
CAGUGUUCGA-AAUAAAGUCGGUGAAAAGGCCGAAAACACUUUGACUGAUUUGUAUGUGGAGCACACAUGAAGGUGCACAGG-GUGUGGAACGAAAAGUUU
...(((((..-.......(((((......)))))..((((((((..((((((.((((((.....)))))).)))).))))))-)))).)))))........ ( -26.30)
>DroEre_CAF1 59243 100 + 1
CAGUGUUCAAAAAUAAAGUCGGUGAAAAAGCCGAAAACACUUUGACUGAUUUGUAUGUGGAGCACACAGGGAGCUGCACAGG-GGGUGGCACGAAAAGUUU
..((((............(((((......)))))...((((((.((......)).((((.(((.(.....).))).)))).)-)))))))))......... ( -24.10)
>DroYak_CAF1 59060 100 + 1
CAGUGUUCAAAAAUAAAGUCGGUGAAAAGGCCGAAAACACUUUGACUGAUUUGUAUGUGGAGCACACAUGGAGCUGCACAGG-CGGUGGAAUGAAAAGUUU
..((((((.......((((((((..((((..........)))).)))))))).......)))))).(((...(((((....)-))))...)))........ ( -27.64)
>consensus
CAGUGUUCGA_AAUAAAGUCGGUGAAAAGGCCGAAAACACUUUGACUGAUUUGUAUGUGGAGCACACAUGGAGGUGCACAGG_GGGUGGAACGAAAAGUUU
...(((((..........(((((......)))))...(((((...(((((((.((((((.....)))))).))))...)))..))))))))))........ (-22.38 = -22.82 +   0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:58:18 2006