Locus 5918

Sequence ID 2R_DroMel_CAF1
Location 18,664,159 – 18,664,257
Length 98
Max. P 0.957775
window9497

overview

Window 7

Location 18,664,159 – 18,664,257
Length 98
Sequences 6
Columns 103
Reading direction forward
Mean pairwise identity 79.53
Mean single sequence MFE -18.62
Consensus MFE -9.16
Energy contribution -11.87
Covariance contribution 2.70
Combinations/Pair 1.28
Mean z-score -3.08
Structure conservation index 0.49
SVM decision value 1.48
SVM RNA-class probability 0.957775
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 18664159 98 + 20766785
CCAUAGAUUAUUAAUGCAGAAAACCCUUCCGCAUUC-CCC----UCAACAGACAAAACAAAUCCUAAUUUGUCUGUUGACUGCUAAAUAAUUUAUUUGCCAAG
..(((((((((((((((.(((.....))).))))).-...----((((((((((((...........))))))))))))......))))))))))........ ( -24.60)
>DroSec_CAF1 27632 97 + 1
GCAUAUAUUACUUAUGCAGAAAACCCUUCCGU-UUC-CCC----UCGACAGACAAAACAAAUCCUAAUUUGCCUGUUGACUGCUAAAUAAUUUAUUUGCCAAG
(((...((((.(((.((((.((((......))-)).-...----(((((((.((((...........)))).)))))))))))))).)))).....))).... ( -17.90)
>DroSim_CAF1 28105 95 + 1
C--UAGAUUACUUAUGCAGAAAACCCUUCCGU-UUC-CCC----UCGACAGACAAAACAAAUCCUAAUUUGUCUGUUGACUGCUAAAUAAUUUAUUUGCCAAG
.--(((((((.(((.((((.((((......))-)).-...----((((((((((((...........))))))))))))))))))).)))))))......... ( -23.30)
>DroEre_CAF1 27504 96 + 1
CCAUGGAUUAUUUAUGCAGAAUACCCUUCCGU-UC--CCC----UCGACACGCAAAACAAAUCCUAAUUUGUCUGUAGACUCCUAAAUAAUUUAUUUGCCAAG
..((((((((((((((((((..........((-(.--...----..)))........(((((....)))))))))))......))))))))))))........ ( -12.80)
>DroYak_CAF1 28215 101 + 1
CCAUAGAUUAUUUAUGCAGAAUACCCUUUCAU-UUUCCCCCCGUCCGACAGGCAAAACAAAUCCUAAU-UGUCUGUUGACUCCUAAAUAAUUUAUUUGCCAAG
..((((((((((((....(((......)))..-.........(((.(((((((((............)-)))))))))))...))))))))))))........ ( -20.20)
>DroPer_CAF1 33219 96 + 1
UCAUUCAUAAUUUAUUCACAAUUCCAU-CUAU-UUC-CAU----UCGACCCGAAGGAAAAUUUCUAUUUUCUCUGUUGACUUUUGCAUAAUUUAUGCCUGAAG
(((..(((((.((((.((.........-...(-(((-(.(----(((...)))))))))..........((......))....)).)))).)))))..))).. ( -12.90)
>consensus
CCAUAGAUUAUUUAUGCAGAAAACCCUUCCGU_UUC_CCC____UCGACAGACAAAACAAAUCCUAAUUUGUCUGUUGACUGCUAAAUAAUUUAUUUGCCAAG
..((((((((((((.((.(((.....))).))............((((((((((((...........))))))))))))....))))))))))))........ ( -9.16 = -11.87 +   2.70)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:58:03 2006