Locus 591

Sequence ID 2R_DroMel_CAF1
Location 3,014,033 – 3,014,153
Length 120
Max. P 0.656964
window1070

overview

Window 0

Location 3,014,033 – 3,014,153
Length 120
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 81.50
Mean single sequence MFE -40.93
Consensus MFE -24.02
Energy contribution -24.33
Covariance contribution 0.31
Combinations/Pair 1.30
Mean z-score -2.12
Structure conservation index 0.59
SVM decision value 0.26
SVM RNA-class probability 0.656964
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 3014033 120 + 20766785
UAGCAUUGAGGCGGCUCAGGCGGCUCGAGACGCUCUGGCCAAGCACAUCUAUGCGAAACUGUUUCAGUAUAUAGUCGGUGUGCUGAACAAGAGCCUCAACAACGGUAGCAAGCAGUGCAG
..((((((..(((((((....((((.(((...))).)))).((((((((.((.....((((...)))).....)).))))))))......)))))...((....)).))...)))))).. ( -42.60)
>DroVir_CAF1 5754 120 + 1
CAACAUGGAGAUGGCGAUGGCCGCAAGGGAUGCUUUGGCCAAGCACAUCUAUGCGAAGCUCUUUCAGUAUAUUGUCAAUGUGCUGAACAAGAGUCUAUUUAACGGUAGCAAACAGUGCAG
........(((((((..((((((.(((.....))))))))).)).))))).((((..(((((((((((((((.....)))))))))..))))))((((......)))).......)))). ( -37.50)
>DroGri_CAF1 5976 120 + 1
CAACAUCGAGAUGGCAAUGGCCGCUCGCGAUGCUCUGGCCAAGCACAUCUAUGCGAAGCUCUUUCAGUAUAUUGUCGGUGUGCUGAACAAGAGCUUGUAUAACGGUAGCAAACAGUGCAG
......((((.((((....))))))))...(((.(((.....((((...(((((.(((((((((((((((((.....)))))))))..)))))))))))))...)).))...))).))). ( -43.90)
>DroWil_CAF1 5667 120 + 1
CAAUAUUGAGGCUGCCGAAGCGGCACGUGAUGCUUUGGCCAAGCAUCUCUAUGCCAAGCUCUUUCAAUAUAUUGUGGGAGUUCUGAACAAGAGUCUCAAUAACGGUAGCAAACAGUGCAG
...(((((..(((((((.(((((((...(((((((.....)))))))....))))..)))..............(((((.((((.....)))))))))....)))))))...)))))... ( -38.20)
>DroMoj_CAF1 5806 120 + 1
CAACAAAGAGAUGGCGAUGGCGGCGCGCGAUGCGCUGGCCAAGCACAUAUACGCGAAGCUAUUUCAGUAUAUAGUCAAUGUGCUGAAUAAGAGCUUGCAUAACGGUAGCAAACAGUGCAG
..........(((((..(((((((((.....))))).)))).)).)))....((.(((((..((((((((((.....))))))))))....))))))).........(((.....))).. ( -39.20)
>DroAna_CAF1 5625 120 + 1
CAGCAUUGAGGCGGCGGAGGCGGCACGUGACGCCCUGGCCAAGCAUAUUUACGCGAAACUGUUCCAGUACAUCGUUGGUGUGCUGAACAAGAGCCUCAAUAACGGUAGCAAGCAGUGCAG
....(((((((((((.(.((((........)))).).)))..((........)).....(((((.(((((((.....))))))))))))...)))))))).......(((.....))).. ( -44.20)
>consensus
CAACAUUGAGACGGCGAAGGCGGCACGCGAUGCUCUGGCCAAGCACAUCUAUGCGAAGCUCUUUCAGUAUAUUGUCGGUGUGCUGAACAAGAGCCUCAAUAACGGUAGCAAACAGUGCAG
............(((.(.((((........)))).).)))..((((.....(((....((..((((((((((.....))))))))))..)).(((........))).)))....)))).. (-24.02 = -24.33 +   0.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:42:17 2006