| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 18,637,380 – 18,637,479 |
| Length | 99 |
| Max. P | 0.500000 |
| Location | 18,637,380 – 18,637,479 |
|---|---|
| Length | 99 |
| Sequences | 6 |
| Columns | 102 |
| Reading direction | reverse |
| Mean pairwise identity | 78.09 |
| Mean single sequence MFE | -26.12 |
| Consensus MFE | -14.47 |
| Energy contribution | -13.92 |
| Covariance contribution | -0.55 |
| Combinations/Pair | 1.44 |
| Mean z-score | -1.61 |
| Structure conservation index | 0.55 |
| SVM decision value | -0.07 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 18637380 99 - 20766785 UGACGAUGUGU-CCGG--UUUUCUAAUAUUUCGAUUCUACAUUUGACAGGUGGCCGUGGAUGAUAUCGUGACUACAGCUCGAGAUGCGGACAUUAUAAUAUU .......((((-(((.--........((((((((.....((((.....))))((.(((((((....)))..)))).)))))))))))))))))......... ( -21.40) >DroSec_CAF1 1053 101 - 1 UGACAAUGUGU-CCAAUAUUUUCCAAUAUUUCCAUCCUACACUUGACAGGUGGCCGUGGAUGAUAUUGUGACCACGGCUCGAGAUGCGGACAUUAUAAUAUU .......((((-((((((((....))))))..(((((..((((.....))))(((((((............)))))))..).)))).))))))......... ( -26.50) >DroSim_CAF1 1049 99 - 1 UGACAAUGUGU-CCAG--UUUUCCAAUAUUUCGAUCCUACACUUGACAGGUGGCCGUGGAUGAUAUUGUGACCACGGCUCGAGAUGCGGACAUUAUAAUAUU .......((((-((.(--.....)..((((((((.....((((.....))))(((((((............))))))))))))))).))))))......... ( -28.50) >DroEre_CAF1 1017 98 - 1 UAACGAUGUGU-CAAG---UUUCUUAUAUUUCAAUUCCACAUCCUUCAGGUGGCCGUGGAUGAUAUUGUGACCACGGCAAGAGAUGCUGACAUCAUUAUAUU ....(((((((-((.(---((((((..............((((.....))))(((((((............))))))))))))))..))))).))))..... ( -29.70) >DroWil_CAF1 1007 100 - 1 -GACAAUUUGCUGCUG-UUUCUUUAAUUAAUAGCUCCCUCUGUUUUUAGGUGGCUGUUGAUGAUGUGGUUAAAACAGCUAGAGAUGCUGACAUUUUAAUAUU -...........((((-(((((...(((((((((..(((........)))..))))))))).....))...)))))))..((((((....))))))...... ( -24.30) >DroYak_CAF1 1010 101 - 1 UAACGAUGUCU-CUGGGCUUUUGUAAUAUUUCGAUUUCACAUUUAACAGGUGGCCGUGGAUGAUAUUGUGACCACGGCUAGAGAUGCAGACAUCAUAAUAUU ....(((((((-....((....))..(((((((....)............(((((((((............))))))))))))))).)))))))........ ( -26.30) >consensus UGACAAUGUGU_CCAG__UUUUCUAAUAUUUCGAUCCCACAUUUGACAGGUGGCCGUGGAUGAUAUUGUGACCACGGCUAGAGAUGCGGACAUUAUAAUAUU ....(((((..............................((((.....))))(((((((............)))))))...........)))))........ (-14.47 = -13.92 + -0.55)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:57:52 2006