Locus 5904

Sequence ID 2R_DroMel_CAF1
Location 18,628,855 – 18,628,945
Length 90
Max. P 0.797128
window9478

overview

Window 8

Location 18,628,855 – 18,628,945
Length 90
Sequences 5
Columns 92
Reading direction forward
Mean pairwise identity 91.19
Mean single sequence MFE -25.06
Consensus MFE -18.90
Energy contribution -18.94
Covariance contribution 0.04
Combinations/Pair 1.19
Mean z-score -1.99
Structure conservation index 0.75
SVM decision value 0.60
SVM RNA-class probability 0.797128
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 18628855 90 + 20766785
UCUCGAUUAAUCCCUUC-CGCAGUGGAAAGCACUUGGCAGAUGAGAAUCGC-AUUUGCUGGAAAGCUGUUUUUCCAGCAAUUGUAAAUCGAG
.(((((((.....((.(-((.((((.....))))))).)).........((-(.(((((((((((....))))))))))).))).))))))) ( -31.30)
>DroSec_CAF1 39516 90 + 1
CUUCGAUUAAUCCCUUC-CGCAGUGGAAAGCACUUGGCAGAUGAGAAUCGC-AUUUGCUGCAAAGCUGUUUUUCCAGCAAUUUUAAAUAGAG
.................-.((.(.(((((((((((((((((((.......)-)))))))...))).))))))))).)).............. ( -18.90)
>DroSim_CAF1 35925 90 + 1
UUUCGAUUAAUCCCUUC-CGCAGUGGAAAGCACUUGGCAGAUGAGAAUCGC-AUUUGCUGCAAAGCUGUUUUUCCAGCAAUUGUAAAUCGAG
..((((((.........-.((((..((..((.....)).(((....)))..-.))..))))...((((......)))).......)))))). ( -23.80)
>DroEre_CAF1 41709 89 + 1
AUUCGAUUAAUCCUUUC-CGCAGUGG-AAGCACUUGGCAGAUGAGAAUCGC-AUUUGCUGGAAAACUAUUUUUCUAGCAAUUGUAAAACGAG
..((((((.(((....(-((.((((.-...)))))))..)))...))))((-(.(((((((((((....))))))))))).))).....)). ( -26.40)
>DroYak_CAF1 38434 92 + 1
AUUCGAUUAAUCCUUUCCCGUCGUGAAAAGCACUUGGCAGAUGAGAAUCGCCAUUUGCUGGGAAACUGUUUUUCUAGCAAUUGUAAAUCGAG
..((((((.....((((((.........((((..((((.(((....)))))))..)))))))))).((((.....))))......)))))). ( -24.90)
>consensus
AUUCGAUUAAUCCCUUC_CGCAGUGGAAAGCACUUGGCAGAUGAGAAUCGC_AUUUGCUGGAAAGCUGUUUUUCCAGCAAUUGUAAAUCGAG
.(((((((...........((((((.....))))..)).(((....))).....(((((((((((....))))))))))).....))))))) (-18.90 = -18.94 +   0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:57:45 2006