Locus 5899

Sequence ID 2R_DroMel_CAF1
Location 18,624,389 – 18,624,491
Length 102
Max. P 0.596458
window9471

overview

Window 1

Location 18,624,389 – 18,624,491
Length 102
Sequences 5
Columns 113
Reading direction forward
Mean pairwise identity 90.49
Mean single sequence MFE -31.36
Consensus MFE -21.99
Energy contribution -22.59
Covariance contribution 0.60
Combinations/Pair 1.00
Mean z-score -2.14
Structure conservation index 0.70
SVM decision value 0.13
SVM RNA-class probability 0.596458
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 18624389 102 + 20766785
AAAACUUUUGUCGAAGUUUGCGCUU----UUCUGGCC-CCAUAAGGCUGGGAAUAUGGUAAGCAGUACG------GGCCAAGAAAAAUGUGCACUUGUCAGCAGAAGAAAAGC
....(((((((.((....(((((((----((((((((-(..((..(((............)))..)).)------)))).))))))..)))))....)).)))))))...... ( -33.40)
>DroSec_CAF1 35143 105 + 1
AAGACUUUUGUCGAAGUUUGCGCUUUU-UUUCUGGCC-CCAUAAGGCUGGCAAUAUGGUAAGCAGUUCG------GGCCAAGAAAAAUGUGCACUUGUCAGCAGAAGAAAACC
....(((((((.((....(((((.(((-((..(((((-(......(((.((......)).))).....)------)))))..))))).)))))....)).)))))))...... ( -37.60)
>DroSim_CAF1 29695 105 + 1
AAAACU-UUGUCGAAGUUUGCGCUUUUUUUUCUGACC-CCAUAAGGCUGGCAAUAUGGUAAGCAGUUCG------GGCCAAGAAAAAUGUGCACUUGUCAGCAGAAGAAAAGC
.....(-((((.((....(((((...(((((((...(-((..(..(((.((......)).)))..)..)------))...))))))).)))))....)).)))))........ ( -27.10)
>DroEre_CAF1 37319 102 + 1
AAAACUUUUAUCGAAGUUUGCGCUU----UUCUGGCC-CCAUAAGGCAGGGAGUAUGGUAAGCAAGACG------GGCCAAGAAAAAUGUGCACUUGUCAGCAGAAGAAAAGC
.(((((((....)))))))..((((----((((.((.-..((((((((.(.....((((..(.....).------.)))).......).))).)))))..))...)))))))) ( -25.70)
>DroYak_CAF1 33985 109 + 1
AAAACUUUUGUCGAAGUUUGCGCUU----UUCUGGCCCCCAUAAGGCAGGGAAUAUGGUAAGCAGGACGGCAGCAGGCCAAGAAAAAUGUGCACUUGUCAGCAGAAGAAAAGC
....(((((((.((....(((((((----(((((((((((........)))..........((......))....)))).))))))..)))))....)).)))))))...... ( -33.00)
>consensus
AAAACUUUUGUCGAAGUUUGCGCUU____UUCUGGCC_CCAUAAGGCUGGGAAUAUGGUAAGCAGUACG______GGCCAAGAAAAAUGUGCACUUGUCAGCAGAAGAAAAGC
....(((((((.((....(((((......((((((((.(((((..........))))).................)))).))))....)))))....)).)))))))...... (-21.99 = -22.59 +   0.60)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:57:38 2006