| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 3,001,727 – 3,001,831 |
| Length | 104 |
| Max. P | 0.507985 |
| Location | 3,001,727 – 3,001,831 |
|---|---|
| Length | 104 |
| Sequences | 5 |
| Columns | 109 |
| Reading direction | reverse |
| Mean pairwise identity | 76.72 |
| Mean single sequence MFE | -22.18 |
| Consensus MFE | -12.10 |
| Energy contribution | -12.58 |
| Covariance contribution | 0.48 |
| Combinations/Pair | 1.15 |
| Mean z-score | -1.69 |
| Structure conservation index | 0.55 |
| SVM decision value | -0.05 |
| SVM RNA-class probability | 0.507985 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 3001727 104 - 20766785 UAGCA-----GAAUCAGUGUGACCAGCCAUUGUGAGGAUCAAAAACUAAACCUCCAAUUCGGCUAUGCCCGCGAUACCCUGAACGAACAGGGGCGCGAAUGACAAAAAC ..(((-----...((.....))..((((((((.((((.............))))))))..)))).))).((((...(((((......))))).))))............ ( -28.72) >DroSec_CAF1 6032 108 - 1 UACCAUAUAACAAUCAGUGUGACCAGCCAUUGUGAGCAUCAAAAACGAAACGU-CAAUUCGGCUAUGCCCGCGAUACCCUGAACAAACAGGGGCGCGAAUGACAAAAAC ...(((((........)))))....(((.....).))..............((-((.((((((...))).(((...(((((......))))).))))))))))...... ( -25.80) >DroSim_CAF1 5925 108 - 1 UACCAUAUAACAAUCAGUGUGACCAGCCAUUGUGAGCAUCAAAAACGAAACGU-CAGUUCGGCUAUGCCCGCGAUACCCUGAACAAACAGGGGCGCGAAUGACAAAAAC ...(((((........)))))....(((.....).))..............((-((.((((((...))).(((...(((((......))))).))))))))))...... ( -25.80) >DroEre_CAF1 5901 87 - 1 -AACAUAUAUA-------------------UGCGACUAUCGAAAACUAAACCUCGAAUUCGGCUAUGCCC--AAUACCCUUAACGAACAGGGGCGCGAAUAACAAAAAC -......(((.-------------------((((....((((..........))))(((.(((...))).--))).((((........)))).)))).)))........ ( -14.00) >DroYak_CAF1 5810 98 - 1 -AACAUACACAUAAUUGUGUGA--------UGUGAUCAUUAAAAACUAAACAUUCAAUUCGGCUAUGCCC--AAUACCCUAAACGAACAGGGGCGCAAAUAACAAAAAC -....((((((....)))))).--------((((......................(((.(((...))).--))).((((........)))).))))............ ( -16.60) >consensus UAACAUAUAAAAAUCAGUGUGACCAGCCAUUGUGAGCAUCAAAAACUAAACCU_CAAUUCGGCUAUGCCCGCGAUACCCUGAACGAACAGGGGCGCGAAUGACAAAAAC .............................(((((..........................(((...))).......(((((......))))).)))))........... (-12.10 = -12.58 + 0.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:42:13 2006