| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 2,995,294 – 2,995,409 |
| Length | 115 |
| Max. P | 0.958327 |
| Location | 2,995,294 – 2,995,409 |
|---|---|
| Length | 115 |
| Sequences | 6 |
| Columns | 116 |
| Reading direction | forward |
| Mean pairwise identity | 73.23 |
| Mean single sequence MFE | -34.02 |
| Consensus MFE | -21.51 |
| Energy contribution | -21.60 |
| Covariance contribution | 0.09 |
| Combinations/Pair | 1.23 |
| Mean z-score | -1.79 |
| Structure conservation index | 0.63 |
| SVM decision value | 1.49 |
| SVM RNA-class probability | 0.958327 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 2995294 115 + 20766785 GGCAUUAUGGCCACAUCGCAAGUGCGAUCUUUCUCGUCCAGCGUGGGCGGCAUCAAGGGAUUGAUGGAGGGUCGCACCUCGAUCUAAAUUG-GGGAACGCAAUAAUACCAUGUUAG (((......))).....((...((((((((((.((((((.....))))))((((((....))))))))))))))))(((((((....))))-)))...))................ ( -40.00) >DroVir_CAF1 21145 107 + 1 GGCAUCAAAGCCACAUCGCAGGUGCGAUCCUUUUCAUCCAACGUCGGCGGCAUUAGCGGAUUUAUCGAUGGACGCACCUCGAUCUGAUUAACAAAAAAAAA---AAAACA------ (((......)))..((((.(((((((.(((...((((((..((....))((....)))))).....)).))))))))))))))..................---......------ ( -30.40) >DroGri_CAF1 19871 106 + 1 GGCAUCAAGGCCACAUCGCAUGUGCGAUCCUUUUCAUCCAGCGUUGGCGGCAUCAACGGAUUUAUGGAGGGACGCACCUCGAUCUAUA-CUCGAAAUUAGG---AUUACA------ (((......)))...((((....))))((((((((......((((((.....)))))).((..((.((((......)))).))..)).-...))))..)))---).....------ ( -27.30) >DroEre_CAF1 19729 112 + 1 GGCAUAAUGGCCACAUCGCAAGUGCGAUCUUUCUCGUCCAGCGUGGGCGGCAUCAAGGGAUUGAUGGAGGGUCGCACCUCGAUCUAUGUUG-GAGGAUACA---AAACAAUGUUAA (((......)))..(((((....))))).....((.((((((((((((..((((((....))))))((((......))))).)))))))))-)).))....---............ ( -39.90) >DroWil_CAF1 19922 110 + 1 GGCAUGAGGGCCACAUCGCAAGUGCGAUCCUUUUCAUCCAAAGUGGGUGGCAUUAAUGGAUUAAUAGAAGGACGCACUUCGAUCUAUUUAA---AAGGUAA---AUCACAAAUUAA (((......)))..((((.(((((((.((((((((((((.....)))))..(((((....)))))))))))))))))))))))........---.......---............ ( -31.40) >DroAna_CAF1 18970 103 + 1 GGCAUAAGGGCCACGUCGCAGGUGCGAUCCUUCUCGUCCAGGGUGGGUGGCAUCAGCGGAUUUAUGGAGGGACGCACCUCAAUCUAAAA------AAUAGA-------AAUAUUAG (((......))).....(.(((((((.(((((((.((((..((((.....))))...))))....))))))))))))))).........------((((..-------..)))).. ( -35.10) >consensus GGCAUAAAGGCCACAUCGCAAGUGCGAUCCUUCUCAUCCAGCGUGGGCGGCAUCAACGGAUUUAUGGAGGGACGCACCUCGAUCUAAAUAA_GAAAAUAAA___AUAACAU_UUA_ (((......)))..((((...(((((.(((((((.((((...(((.....)))....))))....))))))))))))..))))................................. (-21.51 = -21.60 + 0.09)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:42:11 2006