Locus 5855

Sequence ID 2R_DroMel_CAF1
Location 18,514,780 – 18,514,873
Length 93
Max. P 0.999960
window9402

overview

Window 2

Location 18,514,780 – 18,514,873
Length 93
Sequences 5
Columns 95
Reading direction reverse
Mean pairwise identity 95.22
Mean single sequence MFE -41.46
Consensus MFE -38.54
Energy contribution -38.78
Covariance contribution 0.24
Combinations/Pair 1.04
Mean z-score -3.07
Structure conservation index 0.93
SVM decision value 4.90
SVM RNA-class probability 0.999960
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 18514780 93 - 20766785
GGAGUGGGACUCGGGCAAGAGUGUCAAUUGUCAGUGGCUGUCGCCGUUUAGCCGUCUUGGCUGGGUCGAGGCCUUCUGGGCCAUACACACAUA--
...(((.(((((((.(((((.((.(....).))..(((((........))))).))))).)))))))..((((.....))))...))).....-- ( -36.90)
>DroSec_CAF1 13782 90 - 1
--AGUGGGACUCGGCCAAGAGUGUCAAUUGUCAGUGGCUGUCGCCGUUUAGCCGUCUUGGCUGGGUCGAGGCCUUCUGGGCCAUGC-CACAUA--
--.(((((((((((((((((.((.(....).))..(((((........))))).)))))))))))))..((((.....))))...)-)))...-- ( -44.50)
>DroSim_CAF1 12006 90 - 1
--AGUGGGACUCGGCCAAGAGUGUCAAUUGUCAGUGGCUGUCGCCGUUUAGCCGUCUUGGCUGGGUCGAGGCCUUCUGGGCCAUGC-CACAUA--
--.(((((((((((((((((.((.(....).))..(((((........))))).)))))))))))))..((((.....))))...)-)))...-- ( -44.50)
>DroEre_CAF1 16971 89 - 1
--AGUGGGACUCGGCCAAGAGUGUCAAUUGUCAGUGGCUGUCGCCGUUUAGCCGUCUUGGCUGGGUCGAGGCCUUCUGGGCCAUGC-CGCAU---
--.(((((((((((((((((.((.(....).))..(((((........))))).)))))))))))))..((((.....))))...)-)))..--- ( -44.10)
>DroYak_CAF1 19590 92 - 1
--AGUGGGACUCGGCCAAAAGUGUCAAUUGUCAGUGGCUGUCGCCGUUUAGCCGUCUUGGCUGGGUCGAGGCCUUCUGGGCCAUGA-CACAUACA
--.(((.(((((((((((.(.((.(....).)).)(((((........)))))...)))))))))))..((((.....))))....-)))..... ( -37.30)
>consensus
__AGUGGGACUCGGCCAAGAGUGUCAAUUGUCAGUGGCUGUCGCCGUUUAGCCGUCUUGGCUGGGUCGAGGCCUUCUGGGCCAUGC_CACAUA__
...(((.(((((((((((((.((.(....).))..(((((........))))).)))))))))))))..((((.....)))).....)))..... (-38.54 = -38.78 +   0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:56:30 2006