Locus 583

Sequence ID 2R_DroMel_CAF1
Location 2,982,135 – 2,982,244
Length 109
Max. P 0.704669
window1061

overview

Window 1

Location 2,982,135 – 2,982,244
Length 109
Sequences 3
Columns 109
Reading direction forward
Mean pairwise identity 86.58
Mean single sequence MFE -22.33
Consensus MFE -20.30
Energy contribution -20.97
Covariance contribution 0.67
Combinations/Pair 1.00
Mean z-score -1.45
Structure conservation index 0.91
SVM decision value 0.36
SVM RNA-class probability 0.704669
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 2982135 109 + 20766785
AGAUCAGCAGCUGAUUUCAUCAGAUGAUUCAGACCACAGAGCACAGAGCACAGAGCAGAGGCAAGACUCACAUUAUCCAAAUAUUUUGGAAUGACAUCGGCAAUGAACU
...(((...((((((.((((..((((..............((.....))........(((......))).)))).(((((.....))))))))).))))))..)))... ( -23.40)
>DroSec_CAF1 6778 95 + 1
AGAUCAGCAGCUGAUUUCAUCAGAUGAUUCAG--------------AGCACAGAGCAGAGGCAAGACUCACAUUAUCCAAAUAUUUUGGAAUGACAUCGGCAAUGAACU
...(((...((((((.((((..((((......--------------.((.....)).(((......))).)))).(((((.....))))))))).))))))..)))... ( -23.40)
>DroSim_CAF1 6753 88 + 1
AGAUCAGCAGCUGAUUUCAUCAGAUGAUUCAG--------------A-------GCAGAGGCAAGACUCACAUUAUCCAAAUAUUUUGGAAUGACAUCGGCAAUGAACU
...(((...((((((.((((............--------------.-------...(((......)))......(((((.....))))))))).))))))..)))... ( -20.20)
>consensus
AGAUCAGCAGCUGAUUUCAUCAGAUGAUUCAG______________AGCACAGAGCAGAGGCAAGACUCACAUUAUCCAAAUAUUUUGGAAUGACAUCGGCAAUGAACU
...(((...((((((.((((..((((.....................((.....)).(((......))).)))).(((((.....))))))))).))))))..)))... (-20.30 = -20.97 +   0.67)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:42:08 2006