| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 2,978,102 – 2,978,209 |
| Length | 107 |
| Max. P | 0.658471 |
| Location | 2,978,102 – 2,978,209 |
|---|---|
| Length | 107 |
| Sequences | 5 |
| Columns | 107 |
| Reading direction | forward |
| Mean pairwise identity | 84.69 |
| Mean single sequence MFE | -45.18 |
| Consensus MFE | -34.66 |
| Energy contribution | -37.38 |
| Covariance contribution | 2.72 |
| Combinations/Pair | 1.20 |
| Mean z-score | -1.68 |
| Structure conservation index | 0.77 |
| SVM decision value | 0.26 |
| SVM RNA-class probability | 0.658471 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 2978102 107 + 20766785 GCGAUGUCCACCGAAGCUGACGAGGUAGCGACGGCUGAGUCCGCACUCUUGGUGGCCCCAGCAGCGGAUGCCGAUGCACUUGCUCCGCUGCUCGAUGUCGGCUUUGG ..........((((((((((((.(((((((.((((...((((((.....((.((....)).))))))))))))..((....))..)))))))...)))))))))))) ( -47.30) >DroSec_CAF1 2753 95 + 1 GCGAUGUCCACCGAAGCUGACGAGGUAGCGGUGGCUGCGUCCGCA------------CCAGCAGCGGAUGCCGAUGCACUUGCUCCGCUACUCGAAGUCGGCUUUGG ..........(((((((((((..((((((((.(((((((((.(((------------((......)).))).))))))...)))))))))))....))))))))))) ( -48.30) >DroSim_CAF1 2730 95 + 1 GCGAUGUCCACCGAAGCUGACGAGGUAGCGGUGGCUGCGUCUGCA------------CCAGCAGUGGAUGCCGAUGCACUUGCUCCGAUACUCGAAGUCGGCUUUGG ..........(((((((((((..((((.(((.(((((((((.(((------------(((....))).))).))))))...)))))).))))....))))))))))) ( -42.30) >DroEre_CAF1 3147 107 + 1 GCGAUGUCCACCGAAGCCGUCGAGGAUGCGGCGGCUGCGUCCACACUUUUGGUGGCUCCAGCAGCGGAUGCCGAUGCACUUGCUCCACUGCUCGAAGUCGGCUUUGG ..........((((((((((((((.(((.(((((.((((((...((.....))((((((......))).))))))))).))))).)).).)))))...))))))))) ( -43.80) >DroYak_CAF1 2782 107 + 1 GCAAUGUCCACCGAAGCUGACGAAGAAGCGGCGGCUGCGCCCGCAUUUUUGGUGGCCCCAGCAGCAGAUGCCGAUGCACUUGCUCCACUGCUGGAAGUCGGCUUUGG ..........(((((((((((.....(((((.(((((.(.((((.......)))).).))))(((((.(((....))).))))).).)))))....))))))))))) ( -44.20) >consensus GCGAUGUCCACCGAAGCUGACGAGGUAGCGGCGGCUGCGUCCGCA_U_UUGGUGGC_CCAGCAGCGGAUGCCGAUGCACUUGCUCCGCUGCUCGAAGUCGGCUUUGG ..........(((((((((((..((((((((..((((.(.((((.......)))).).))))((((..(((....)))..))))))))))))....))))))))))) (-34.66 = -37.38 + 2.72)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:42:05 2006