Locus 58

Sequence ID 2R_DroMel_CAF1
Location 1,312,383 – 1,312,503
Length 120
Max. P 0.917411
window110

overview

Window 0

Location 1,312,383 – 1,312,503
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 90.67
Mean single sequence MFE -47.66
Consensus MFE -40.02
Energy contribution -40.94
Covariance contribution 0.92
Combinations/Pair 1.18
Mean z-score -1.72
Structure conservation index 0.84
SVM decision value 1.11
SVM RNA-class probability 0.917411
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 1312383 120 + 20766785
CUGCGAACUCCUUUGUGCUCGCGGAAACUGGUGCGUGGCGGGCGUAAAAUUCGCCAGUGACUCCGCGUUAAGUCAACUGUUCCUGCGAACUACUGCGAGUGCGAGGGCACGUUGCAGCCA
((((((...((((((..(((((((..(((...((((((..((((.......)))).......))))))..))).....((((....))))..)))))))..))))))....))))))... ( -50.10)
>DroSec_CAF1 30792 120 + 1
UUGCGAACUCCUUUGUGCUCGCGGAAACUGGUGCGUGGCGGGCGUAAAAUUCGCCAGUGACUCCGCGUUAAGUCAACUGCUCCUGCGAACUACUGCGAGUGCGAAGGCAGGUUGCAGCCA
((((((.((((((((..(((((((....((((.((((((.((((.......))))(((((((........)))).))))))...))).)))))))))))..)))))).)).))))))... ( -50.30)
>DroSim_CAF1 9724 120 + 1
UUGCGAACUCCUUUGUGCUCGCGGAAACUGGUGCGUGGCGGGCGUAAAAUUCGCCAGUGACUCCGCGUUAAGUCAACUGCUCCUGCGAACUACUGCGAGUGCGAAGGCAGGUUGCAGCCA
((((((.((((((((..(((((((....((((.((((((.((((.......))))(((((((........)))).))))))...))).)))))))))))..)))))).)).))))))... ( -50.30)
>DroEre_CAF1 13221 120 + 1
UUGCGAACGCCUUGGUGCUCGCGAAAACUGGUGCGUGGCGGGCGUUAAAUUCGCCAGUGACUCCGCGUCAAGUCAACUGUUUCUGAGAACCACUGCGAGUGCGAAGACUGCUUGCAGUCA
(((((..(((..((((.((((.(((((((((((..((((....))))....)))))))((((........)))).....)))))))).))))..)))..))))).(((((....))))). ( -44.10)
>DroYak_CAF1 320 120 + 1
UUGUGAACGCCUUAAUGCUCGCGAAAACUGGUGCGCGGCGGGCGUAAUAUUCGCCAGUGACUCCGCGUUAAGGCAACUGUUCCUGCAAGCAACUGCGAGUGCGAAGGCAGCUUGCUGUCA
((((((((((((((((((.((((..........))))((.((((.......)))).))......))))))))))....))))..))))...((.((((((((....))).))))).)).. ( -43.50)
>consensus
UUGCGAACUCCUUUGUGCUCGCGGAAACUGGUGCGUGGCGGGCGUAAAAUUCGCCAGUGACUCCGCGUUAAGUCAACUGUUCCUGCGAACUACUGCGAGUGCGAAGGCAGGUUGCAGCCA
((((((.(((((((((((((((((..(((...((((((..((((.......)))).......))))))..)))....(((....))).....))))))))))))))).)).))))))... (-40.02 = -40.94 +   0.92)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:25:04 2006