Locus 5791

Sequence ID 2R_DroMel_CAF1
Location 18,347,531 – 18,347,631
Length 100
Max. P 0.708406
window9273

overview

Window 3

Location 18,347,531 – 18,347,631
Length 100
Sequences 3
Columns 100
Reading direction reverse
Mean pairwise identity 82.00
Mean single sequence MFE -26.93
Consensus MFE -17.60
Energy contribution -17.60
Covariance contribution 0.00
Combinations/Pair 1.09
Mean z-score -2.02
Structure conservation index 0.65
SVM decision value 0.37
SVM RNA-class probability 0.708406
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 18347531 100 - 20766785
UCAGCCAAUUCCUCGCCUGGCCAUUACAAUCUCGAGUGAUUCCCCUUGCUUGAGUGUGUUAUGAGCCAAAGCUAAGUAGGCUCCAUUUGAGAUUACCAGC
..((((.(((....((.(((((((.(((..((((((..(......)..))))))..))).))).))))..))..))).)))).................. ( -26.60)
>DroSim_CAF1 31558 100 - 1
UCAGCCAAUUCCUCGCCUGGCCAUUACAAUCUCGAGUGAUUCCCCUUGCUUGAGUGGGUUAUGAGCCAAAGCUGAGUAGGCUCCAUUUGAGAUUACCAGA
..((((.((((...((.(((((((.((...((((((..(......)..))))))...)).))).))))..)).)))).)))).................. ( -29.40)
>DroEre_CAF1 33367 84 - 1
UCAAC----------------CAUCACAAUCUCGAGUGAUUCCCCUAGCUUGAGUGUUCUUUGAGCCAAAGCUAAGUAGAGUCCAUUUGAGAUUACCAGA
.....----------------......(((((((((((((((..(((((((..(.((((...))))).))))).))..)))).)))))))))))...... ( -24.80)
>consensus
UCAGCCAAUUCCUCGCCUGGCCAUUACAAUCUCGAGUGAUUCCCCUUGCUUGAGUGUGUUAUGAGCCAAAGCUAAGUAGGCUCCAUUUGAGAUUACCAGA
...........................(((((((((((..((..(((((((..((.........))..)))).)))..))...)))))))))))...... (-17.60 = -17.60 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:54:26 2006