Locus 579

Sequence ID 2R_DroMel_CAF1
Location 2,974,914 – 2,975,015
Length 101
Max. P 0.946585
window1056

overview

Window 6

Location 2,974,914 – 2,975,015
Length 101
Sequences 4
Columns 101
Reading direction forward
Mean pairwise identity 87.62
Mean single sequence MFE -31.12
Consensus MFE -24.59
Energy contribution -26.65
Covariance contribution 2.06
Combinations/Pair 1.10
Mean z-score -2.37
Structure conservation index 0.79
SVM decision value 1.36
SVM RNA-class probability 0.946585
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 2974914 101 + 20766785
AACAAUCAACAAAACCGAGCUGCUGGCAUCUGGCAACGCCCGCUAUAUGCAUAAAAGUGGGCAGCUCUGUUGGGGGGGUCAUUUAAAAAUGCGAGCUUCCA
.....((((((.....((((((((.((....(((...))).((.....))......)).))))))))))))))((((((((((....))))...)))))). ( -33.00)
>DroSec_CAF1 30864 101 + 1
AACAAUCAACAAAACCGAGCUGCUGGCAUGUGGCAACGCCCGCUAUAUACAUAAAAGUGGGCAGCUCUGUUGGGAGGGUCAUUUAAAAUUGCGAGCUUCCA
......(((((.....(((((((((((..(((....)))..))).....(((....))))))))))))))))(((((.((............)).))))). ( -33.70)
>DroSim_CAF1 28824 101 + 1
AACAAUCAACAAAACCGAGCUGCUGGCAUCUGGCAACGCCCGCUAUAUACAUAAAAGUGGGCAGCUCUGUUGGGAGGGUCAUUUAAAAUUGCGAGCUUCCA
......(((((.....(((((((..(...)..))...(((((((...........)))))))))))))))))(((((.((............)).))))). ( -33.90)
>DroYak_CAF1 16377 92 + 1
AACAAUCAACAAAAUCGAGCUGCUGGCAUCUGGCAACGCCCGCUAGAUAUUUAAAAGCAGGCACCUCUGUUGGGCGGGCCAUUUGAAAAUAU---------
..............(((((.(((..(...)..)))..(((((((...........((((((....)))))).)))))))..)))))......--------- ( -23.90)
>consensus
AACAAUCAACAAAACCGAGCUGCUGGCAUCUGGCAACGCCCGCUAUAUACAUAAAAGUGGGCAGCUCUGUUGGGAGGGUCAUUUAAAAAUGCGAGCUUCCA
......(((((.....((((((((.(((((((((.......)))))))........)).)))))))))))))(((((.((............)).))))). (-24.59 = -26.65 +   2.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:42:04 2006