Locus 5783

Sequence ID 2R_DroMel_CAF1
Location 18,324,176 – 18,324,267
Length 91
Max. P 0.500000
window9264

overview

Window 4

Location 18,324,176 – 18,324,267
Length 91
Sequences 6
Columns 91
Reading direction reverse
Mean pairwise identity 65.26
Mean single sequence MFE -26.73
Consensus MFE -13.10
Energy contribution -15.47
Covariance contribution 2.37
Combinations/Pair 1.30
Mean z-score -1.31
Structure conservation index 0.49
SVM decision value -0.07
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 18324176 91 - 20766785
AACUGUUCGCAUAAGAGGCACUGCACUUGGGUGCACUGAACUCGACAGGAUGAGUCCAGAAGGAUAUGUCUUCACCCUGCUGUGGGCCAAA
....(((((((...(((.((.(((((....))))).))..)))(.((((.((((..((........))..)))).)))))))))))).... ( -27.60)
>DroSec_CAF1 7925 74 - 1
-----------------GCACUGCACUUGGGUACACUGAACUCGACAGGAUGCGUCCCGAAGGAUGUGUCUUGACCCUGCUGUGGGCCAAA
-----------------((.(..((...((((....((....)).((((((((((((....))))))))))))))))...))..))).... ( -27.60)
>DroSim_CAF1 7899 74 - 1
-----------------GCACUGCACUUGGGUACACUGAACUCGACAGGAUGCGUCCCGAAGGAUGUGUCUUGACCCUGCUGUGGGCCAAA
-----------------((.(..((...((((....((....)).((((((((((((....))))))))))))))))...))..))).... ( -27.60)
>DroEre_CAF1 7743 84 - 1
AACUGUUGGCAUAAGCGCCACUGCACUUGGGUGCACUGAACUCCACAGGAUGUGUACGGAAGGAUGUGGGUUGACCGCGUUGUG-------
..((((..((((..(((((.(.......)))))).(((.......))).))))..)))).(.(((((((.....))))))).).------- ( -25.00)
>DroYak_CAF1 7837 75 - 1
----------------GCCACUGCACUUGGGUGCACUGAACUGCAAAGGAUGUGUCCCGAAGGAUAUGUCUUGACCCUGCUGUGGGCCAUG
----------------.((((.(((...(((((((......)))..(((((((((((....))))))))))).))))))).))))...... ( -28.90)
>DroPer_CAF1 7499 69 - 1
AGCUGUC-----AAGGGGGGGU---GUCGGGUGCAUUGAACUUGACAGA-------------GACGUG-CAUGACCCUGCCACUGGUCAGU
.((((((-----(..((.(((.---(((..((((((....(((....))-------------)..)))-))))))))).))..))).)))) ( -23.70)
>consensus
________________GGCACUGCACUUGGGUGCACUGAACUCGACAGGAUGCGUCCCGAAGGAUGUGUCUUGACCCUGCUGUGGGCCAAA
..................(((.((..((((((.......))))))((((((((((((....)))))))))))).....)).)))....... (-13.10 = -15.47 +   2.37)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:54:18 2006